Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04460 277 / 1e-92 PEX12, ATPEX12, APM4 ABERRANT PEROXISOME MORPHOLOGY 4, peroxin-12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032777 [exp] 404 / 9e-143 AT3G04460 592 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 4, peroxin-12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G047800 [exp] 320 / 2e-109 AT3G04460 624 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 4, peroxin-12 (.1) Potri.019G020000 [exp] 307 / 1e-104 AT3G04460 621 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 4, peroxin-12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04757 [flax] [poplar] Pex2_Pex12 Pex2 / Pex12 amino terminal region
Representative CDS sequence Show only first row Show all	>Lus10029609 pacid=23152034 polypeptide=Lus10029609 locus=Lus10029609.g ID=Lus10029609.BGIv1.0 annot-version=v1.0 ATGTTGTTCCAGGTAGGAGGGCAAGGGGATCGACCCACCTTCTTCGAGATGGCAGCTGCTCAACAGCTTCCCTCCAGTCTCAGGGCTGCTCTCACCTATT CCATCGGCGTGTTGGCCCTGAGGAGCCCCTTCCTCCATAAGGTCTTAGACTATGAAGATGAGTTCTTTGCTGCCCTTATGCTGGTTCTCGAGACTCATAG CTTACGAACCACAGATGCTTCGTTTGCCGAGTCACTCTATGGATTGCGGAGACGATCAGTACGCATTCAAGTAAAGAACGATGATCTTAGATTGAAGAAA GAGGATAAAACTCCCCGCTCCGGCCTCGAGAAGCGCCAGCGAATCCTCTCAGTTGTATTTCTGGTTGTCTTGCCTTATTTCAAGTCAAAGTTGCAATCTG TATACAATAGAGAAAGAGAAGCCAGGCTTCAAGCAAGCTTGTGGGGGAATGAGGATGAATCATTTGAAGGCACTTCGTATTTTGTTGGCACCGAAGCTTC TTCTGTTCCTGGAGGAACTTCTGATGTACAATTGACAGCTAGAGCGCGTTTAAGAAAGAGAATTCAGAAAGTTGTTTTTGCTTGCTATCCTTTTCTACAC GCCGGAATTGAAGGGACAGTAGCCTTTGTAGAATTACAGCATACAGCTCGTAGTGTTAGGTGTAGGGTTAGCAGATCATATCTAGCCTAA
AA sequence Show only first row Show all	>Lus10029609 pacid=23152034 polypeptide=Lus10029609 locus=Lus10029609.g ID=Lus10029609.BGIv1.0 annot-version=v1.0 MLFQVGGQGDRPTFFEMAAAQQLPSSLRAALTYSIGVLALRSPFLHKVLDYEDEFFAALMLVLETHSLRTTDASFAESLYGLRRRSVRIQVKNDDLRLKK EDKTPRSGLEKRQRILSVVFLVVLPYFKSKLQSVYNREREARLQASLWGNEDESFEGTSYFVGTEASSVPGGTSDVQLTARARLRKRIQKVVFACYPFLH AGIEGTVAFVELQHTARSVRCRVSRSYLA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04460		PEX12, ATPEX12,...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10029609 [exp]	0	1
AT5G42400		SDG25, ATXR7	ARABIDOPSIS TRITHORAX-RELATED7...		Lus10025172 [exp]	25.1	0.7106
AT3G07400			lipase class 3 family protein ...		Lus10020409 [exp]	29.8	0.7191
AT2G27350		OTLD1	otubain-like deubiquitinase 1,...		Lus10013302 [exp]	114.0	0.6508
AT1G64310			Tetratricopeptide repeat (TPR)...		Lus10025624 [exp]	120.8	0.6577
AT4G15840			BTB/POZ domain-containing prot...		Lus10002874 [exp]	179.2	0.6337

Compare expression of checked genes

Lus10029609 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.