Plant FIBer expression Database

Lus10029610 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G04460 249 / 3e-83 PEX12, ATPEX12, APM4 ABERRANT PEROXISOME MORPHOLOGY 4, peroxin-12 (.1)
AT3G20010 39 / 0.0008 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032777
[exp]
294 / 1e-100 AT3G04460 592 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 4, peroxin-12 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G020000
[exp]
270 / 2e-91 AT3G04460 621 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 4, peroxin-12 (.1)
Potri.013G047800
[exp]
265 / 3e-89 AT3G04460 624 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 4, peroxin-12 (.1)
PFAM info
Representative CDS sequence
>Lus10029610 pacid=23152044 polypeptide=Lus10029610 locus=Lus10029610.g ID=Lus10029610.BGIv1.0 annot-version=v1.0
ATGGACACATCTTCTAGAATTTCTAAGATACGAACTCGTGAACGGGAGAGGCTCCGTGGCCCTCCATGGTTGAAGGCACTACAAGGAGCAATACTGAGAG
GTTCATATACAGTGCTTGACTATGCACAAACTGGTCTGATTGCTGCAGTGTTCTTCTTCAAAATGATGGAATGGTGGTATCAATCTGCTGAAGAGAGAAT
GTCAGCTCCAACTGTATACCCGCCACCACCTCCACCTCCACCTCCGAAGGTCGCGAAAGAAGGGATTTCGCTGCCAAATGATAGAACGCTTTGCCCTTTG
TGCTCTCAGAAGCGTGCAAACCCGTCAGTGGTCACTGTCTCAGGGTTCGTCTTCTGTTATGCTTGTGTCTTCAAATACATATCGCAGTATAATCGTTGTC
CTGTCACATTGATGTCATCAAACGTCGACCAGATACGAAGGCTCTTCCACGATATGTAG
AA sequence
>Lus10029610 pacid=23152044 polypeptide=Lus10029610 locus=Lus10029610.g ID=Lus10029610.BGIv1.0 annot-version=v1.0
MDTSSRISKIRTRERERLRGPPWLKALQGAILRGSYTVLDYAQTGLIAAVFFFKMMEWWYQSAEERMSAPTVYPPPPPPPPPKVAKEGISLPNDRTLCPL
CSQKRANPSVVTVSGFVFCYACVFKYISQYNRCPVTLMSSNVDQIRRLFHDM

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G04460 PEX12, ATPEX12,... ABERRANT PEROXISOME MORPHOLOGY... Lus10029610
[exp]
0 1
AT3G15580 APG8H, ATG8I AUTOPHAGY 8I, AUTOPHAGY 8H, Ub... Lus10038046
[exp]
10.4 0.6975
AT5G23090 CCAAT NF-YB13 "nuclear factor Y, subunit B13... Lus10009614
[exp]
21.3 0.6838
AT1G51720 Amino acid dehydrogenase famil... Lus10037612
[exp]
21.4 0.6862
AT3G26100 Regulator of chromosome conden... Lus10011399
[exp]
25.4 0.6432
AT5G18310 unknown protein Lus10021984
[exp]
38.2 0.6077
AT3G47300 SELT SELT-like protein precursor (.... Lus10018247
[exp]
38.3 0.6524
AT3G25070 RIN4 RPM1 interacting protein 4 (.1... Lus10036939
[exp]
45.0 0.6350
AT4G07990 Chaperone DnaJ-domain superfam... Lus10032795
[exp]
47.0 0.6124
AT2G36840 ACR10 ACT domain repeats 10, ACT-lik... Lus10017470
[exp]
50.2 0.6239
AT3G11570 TBL8 TRICHOME BIREFRINGENCE-LIKE 8 ... Lus10021328
[exp]
55.0 0.6117

Lus10029610 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.