Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04030 61 / 6e-10 unknown protein AT5G44040 56 / 2e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032776 [exp] 332 / 2e-113 AT5G44040 59 / 7e-10 unknown protein Lus10003613 [exp] 49 / 5e-06 AT1G04030 211 / 1e-63 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G047700 [exp] 111 / 2e-27 AT1G04030 147 / 1e-39 unknown protein Potri.002G258501 [exp] 60 / 9e-10 AT1G04030 172 / 1e-48 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029611 pacid=23151996 polypeptide=Lus10029611 locus=Lus10029611.g ID=Lus10029611.BGIv1.0 annot-version=v1.0 ATGGTGTGCTTTAGATCCTGCTTCACCCCTTTATTCAAATCTCGAAAGCGCAGACAATATTTATCAGCTGTTTCTTCTTCACCCTCTAAACACCCATTTG TTAGCTTAGCAAATTCTCCTCCTTATGGCCATGGAGGAGTCTTGGAACCCATCTCTGAAGAACCCACCAACACCAACCATGTTGCCTCTGAATCCAAGGA GAAGAAGTTTGAGAAGAAGGTAGAGCAACTCAGCTGCAATGTTGTAAAGAAAGTGGCTTTTGAGGTGGAAACCCGCAAAAAGGAGCAGACTTTATCTGAT GAACAAGCTGGCACTGTTGGGAAAACAGAAGAGCAGCATAATGGAAGCGAACCCAAACAAAATCTAGCACCAAGTTGTTCAAATAAAGAGGTTGAAGATG GTGGACTGGTAATCTTTGATGCAGCTGATGAGGGTAGTTATGAAGACAGCGAAGGAGGTTACGGGACAGTCATGGAAGAATCTTCGGAGTCGCTGTTTTC GATCTCGATCAGTTCGAGAAAATACCAAGCTGATATGGGTGAAAAGGAAGTCACCAGTCCACTCCCGAAATGTGTCTCATCAGACAACTCAAATTACGTT TCAGTGTTGGAAGAAAACCAGTTGAAAGAAGCAGCCAAAGAAACAACTCAGCAGTATGAAGACAAGGAAAACGTCAAAATAGACTTAAACATCGTCAGTT GCTCCAGTCCCGAGTTTAGCTTCAAGCCATTGATCAACGATTCGGAGAAGGGAGCTGCTAATCTAAAGAAGCTTGCACAGCAAGATGTTGCAGTTGATGC TAGCCTGTCTAATTGGTTGGTTGGATCAGGAGGAGGAGACCAAAAACCTCAGCAGGAGGAGAACAGTGTTGAATCAGTTGGATATTCGACAGAGAGACGG CAAGATCGGCCAGTTCTAGGAGCATTGACAATCGGTGTACTTAAACAGGTTACTGCAAATAGAACCTCACCATCAAAGTCAAGAAGCCAGAGAATTAGTG GAACGGCTATCACGGGAACTGTTGGAAGCTACTGGATGCAGACTGGCCGTAATGCCGATTAA
AA sequence Show only first row Show all	>Lus10029611 pacid=23151996 polypeptide=Lus10029611 locus=Lus10029611.g ID=Lus10029611.BGIv1.0 annot-version=v1.0 MVCFRSCFTPLFKSRKRRQYLSAVSSSPSKHPFVSLANSPPYGHGGVLEPISEEPTNTNHVASESKEKKFEKKVEQLSCNVVKKVAFEVETRKKEQTLSD EQAGTVGKTEEQHNGSEPKQNLAPSCSNKEVEDGGLVIFDAADEGSYEDSEGGYGTVMEESSESLFSISISSRKYQADMGEKEVTSPLPKCVSSDNSNYV SVLEENQLKEAAKETTQQYEDKENVKIDLNIVSCSSPEFSFKPLINDSEKGAANLKKLAQQDVAVDASLSNWLVGSGGGDQKPQQEENSVESVGYSTERR QDRPVLGALTIGVLKQVTANRTSPSKSRSQRISGTAITGTVGSYWMQTGRNAD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04030			unknown protein		Lus10029611 [exp]	0	1
AT3G25980		MAD2	MITOTIC ARREST-DEFICIENT 2, DN...		Lus10006436 [exp]	1.0	0.9341
AT3G18520		HDA15, ATHDA15	histone deacetylase 15 (.1.2)		Lus10024919 [exp]	1.4	0.9296
AT5G65120			unknown protein		Lus10016802 [exp]	3.5	0.9259
AT1G77580			Plant protein of unknown funct...		Lus10029679 [exp]	3.9	0.9237
AT1G01370		CENH3, HTR12	CENTROMERIC HISTONE H3, Histon...		Lus10008119 [exp]	4.9	0.9077
AT1G67180			zinc finger (C3HC4-type RING f...		Lus10034088 [exp]	5.5	0.9143
AT1G19080		PSF3, TTN10	TITAN 10, Partner of SLD5 3, G...		Lus10014848 [exp]	6.9	0.9010
AT1G08560		KN, ATSYP111, S...	KNOLLE, syntaxin of plants 11...		Lus10042527 [exp]	13.7	0.9253
AT1G54385			ARM repeat superfamily protein...		Lus10010672 [exp]	15.8	0.9094
AT3G25980		MAD2	MITOTIC ARREST-DEFICIENT 2, DN...		Lus10011376 [exp]	15.9	0.9106

Compare expression of checked genes

Lus10029611 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.