Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04470 801 / 0 Ankyrin repeat family protein (.1) AT1G04780 599 / 0 Ankyrin repeat family protein (.1) AT3G24210 561 / 0 Ankyrin repeat family protein (.1) AT1G62050 338 / 1e-106 Ankyrin repeat family protein (.1) AT1G11740 315 / 2e-97 ankyrin repeat family protein (.1) AT1G10865 115 / 5e-31 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008195 [exp] 904 / 0 AT3G04470 878 / 0.0 Ankyrin repeat family protein (.1) Lus10011743 [exp] 588 / 0 AT1G04780 852 / 0.0 Ankyrin repeat family protein (.1) Lus10000752 [exp] 585 / 0 AT1G04780 863 / 0.0 Ankyrin repeat family protein (.1) Lus10032775 [exp] 513 / 3e-174 AT3G04470 698 / 0.0 Ankyrin repeat family protein (.1) Lus10027960 [exp] 458 / 8e-156 AT3G04470 412 / 3e-139 Ankyrin repeat family protein (.1) Lus10027961 [exp] 394 / 2e-133 AT3G04470 409 / 3e-141 Ankyrin repeat family protein (.1) Lus10002942 [exp] 320 / 6e-100 AT1G62050 707 / 0.0 Ankyrin repeat family protein (.1) Lus10003524 [exp] 211 / 1e-60 AT1G62050 531 / 0.0 Ankyrin repeat family protein (.1) Lus10032774 [exp] 131 / 3e-36 AT1G10865 105 / 8e-32 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G019700 [exp] 921 / 0 AT3G04470 883 / 0.0 Ankyrin repeat family protein (.1) Potri.013G047500 [exp] 916 / 0 AT3G04470 881 / 0.0 Ankyrin repeat family protein (.1) Potri.001G051400 [exp] 618 / 0 AT1G04780 907 / 0.0 Ankyrin repeat family protein (.1) Potri.003G177000 [exp] 602 / 0 AT1G04780 862 / 0.0 Ankyrin repeat family protein (.1) Potri.011G004500 [exp] 326 / 3e-102 AT1G62050 588 / 0.0 Ankyrin repeat family protein (.1) Potri.004G013500 [exp] 326 / 4e-102 AT1G62050 558 / 0.0 Ankyrin repeat family protein (.1) Potri.008G010300 [exp] 118 / 8e-32 AT1G10865 124 / 2e-39 unknown protein Potri.010G248800 [exp] 110 / 3e-29 AT1G10865 120 / 1e-37 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11904 [flax] [poplar] GPCR_chapero_1 GPCR-chaperone PF10203 [flax] [poplar] Pet191_N Cytochrome c oxidase assembly protein PET191
Representative CDS sequence Show only first row Show all	>Lus10029612 pacid=23151990 polypeptide=Lus10029612 locus=Lus10029612.g ID=Lus10029612.BGIv1.0 annot-version=v1.0 ATGGCAAAGTCGTGCAAGGGGCTTGCGATAGAACTCGTTAAGTGTCTCAGCGAATCCGACTGTGTCAAAGTTGAGAACCGATCCATCAGGGATTGTGCCG GCGAGAAGAGCCCCTGCGTTCCCAGCGAGTGCGTTGGACTCCGGGAAACCTATTTCAACTGCAAGAGAGGCCAGCACAAGACTCTACTGTTTCGGATATT GAACCCTAATTTTTACTTGAGGGTGTATACATTGTTGGGAGGTGAGTTTGAATATGCACATTTGGCAGTCGCACGACGTGATTATTCTGGCCTGAGACGC ATTATTTTGAACCTGCCGCGCCTTGCCAAGGCTGGTGAGGTTACTACTGAAGAACAGTCGGTTGCATCTGAACAGGAAGCTGATGCATTCTCTGCCATCA TTGATCGCCGGGATGTTCCTGGTCGGGAGACGCCTCTGCATCTTGCTGTTAAATTGAGGGACCAAACGTCGGCAGAGATCTTAATGGCTGCTGGTGCGGA CTGGAGCCTGCAAAATGAGAATGGGTGGAGTGCGCTTCAGGAAGCAGTTTGCACAAGGGAGGAGGCGATTGCTTTGATAATTGCTCGTCACTATCAGCCA CTGGCCTGGGCGAAATGGTGCCGTCGACTTCCTCGTATTGTGGCTTCAGCAGGTCGTATTCGTGATTTTTACATGGAGATTACGTTTCATTTCGAGAGTT CTGTCATCCCATTCATTGGCCGTATCGCCCCCTCGGATACGTATCGCATCTGGAAACGCGGTGCTAATCTTCGGGCGGACATGACACTTGCTGGGTTTGA TGGGTTCCGGATTCAAAGATCGGATCAGACTTTTCTTTTCTTGGGAGAGGGGTACTCTTCAGAGGATGGCAACACATCCTTACAACCAGGTTCTTTGCTT GTTCTTGCACACAAGGAAAAAGAGGTTACTAATGCTTTGGAGGGAGCAGGTGCACAACCGACTGAAGCAGAAGTCGCCCATGAAGTTGCTCTCATGTCTC AAACTAACATGTATAGGCCAGGAATTGACGTCACACAGGCAGAGCTAGTTCCTCATTTGAATTGGAGACGGCATGAAAGGACTGAGATGGTTGGAAGTTG GAAGGCCAAGGTACATGATATGCTTAATGTGATGGTAAGTGTGAAGTCAAGACGAGTTCCTGGTGCTATGACTGATGAGGAACTTTTTGCTGTGGAAGAT GAAGAAAGGTTGGAAAATGGAGCAGGTCACGATGATTTTGACGATGTGTTGACACCTGAAGAGAAAAAGCAGTTAGACACTGCACTTCGTATGGGGAATT CAGATGGTGTCGGGGAGTGTGAAGAACCGGCTGTGCTTGAATACCAAGAAAATGGTTCAGGTGGTTCATACGAAAATGGTGAATCACATGGTACCACTAA AGAGAAGAAGGGCTGGTTTGGTTGGAAACATAAAGGTGCAAAGCACCACAATGATGACTCTGAAGATCCGAAAACATCTAAGAAGGTTGCGAAATTTACT CCAGAAGGTGACAATCTGAAATCTGTTGATCATCAGAAATCATCATCTGGTTGGGAAGATCCAGGAGATACAAAGAAGGGAAATGATAAAAGTGGGAAGA AGAAAAAGAAGAAAGGGCCCAGCAGTGAGACTAAGAATGAAAGCGAGTATAAAAAGGGTTTGCGTCCTGTATTGTGGTTGACACCTGATTTTCCATTGAA AATAGAAGAGCTTCTGCCTTTGCTTGACATATTGGCTAACAAGGTTAAGGCTATTAGGAGACTCAGAGAACTTTTGACTACTAAACTACCTTCTGGAACA TTTCCTGTCAAGGTTGCCATTCCTATTGTTCCAACTGTAAGGGTGATTGTTACATTCACGAAATTTGAGGAGCATATGCCAGTAGAGGAGTTCTCAACAC CTCTTTCCAGCCCAACACATTTTCATGATGCCAAATCCAGAGACTTCGACTCAATCTCGTCAACTTCTTGGATATCATGGATGAAAGGGGGTCGAGGCGG GCAGACAAGTGATAGTGATGGCCACTGGCACAAAGACGAGACTGACCCGTTCCATATACCGTCAGATTATAAGTGGGTTGATGCAAATGAAAAGAAACAA CGGATGAAAGCTAGGAGAGCCAAAGCCAAGAAACATAGGAAACCACAGCAAGCAGCCAGAAGCGGAGGCGTTGGAGGAGATAGCGCGGGTAATCGTCGAA TCGAAACCGCTGAAGATTGA
AA sequence Show only first row Show all	>Lus10029612 pacid=23151990 polypeptide=Lus10029612 locus=Lus10029612.g ID=Lus10029612.BGIv1.0 annot-version=v1.0 MAKSCKGLAIELVKCLSESDCVKVENRSIRDCAGEKSPCVPSECVGLRETYFNCKRGQHKTLLFRILNPNFYLRVYTLLGGEFEYAHLAVARRDYSGLRR IILNLPRLAKAGEVTTEEQSVASEQEADAFSAIIDRRDVPGRETPLHLAVKLRDQTSAEILMAAGADWSLQNENGWSALQEAVCTREEAIALIIARHYQP LAWAKWCRRLPRIVASAGRIRDFYMEITFHFESSVIPFIGRIAPSDTYRIWKRGANLRADMTLAGFDGFRIQRSDQTFLFLGEGYSSEDGNTSLQPGSLL VLAHKEKEVTNALEGAGAQPTEAEVAHEVALMSQTNMYRPGIDVTQAELVPHLNWRRHERTEMVGSWKAKVHDMLNVMVSVKSRRVPGAMTDEELFAVED EERLENGAGHDDFDDVLTPEEKKQLDTALRMGNSDGVGECEEPAVLEYQENGSGGSYENGESHGTTKEKKGWFGWKHKGAKHHNDDSEDPKTSKKVAKFT PEGDNLKSVDHQKSSSGWEDPGDTKKGNDKSGKKKKKKGPSSETKNESEYKKGLRPVLWLTPDFPLKIEELLPLLDILANKVKAIRRLRELLTTKLPSGT FPVKVAIPIVPTVRVIVTFTKFEEHMPVEEFSTPLSSPTHFHDAKSRDFDSISSTSWISWMKGGRGGQTSDSDGHWHKDETDPFHIPSDYKWVDANEKKQ RMKARRAKAKKHRKPQQAARSGGVGGDSAGNRRIETAED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04470			Ankyrin repeat family protein ...		Lus10029612 [exp]	0	1
AT3G22270			Topoisomerase II-associated pr...		Lus10012099 [exp]	1.4	0.8161
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Lus10030002 [exp]	2.4	0.8114
AT5G10080			Eukaryotic aspartyl protease f...		Lus10019678 [exp]	7.9	0.7579
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10038753 [exp]	8.7	0.8084
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10000951 [exp]	9.2	0.7952
AT4G10810			unknown protein		Lus10022380 [exp]	13.2	0.7134
AT4G10925			Nuclear transport factor 2 (NT...		Lus10023064 [exp]	13.8	0.7558
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10004129 [exp]	14.8	0.7808
AT4G39100		SHL1	short life, PHD finger family ...		Lus10028801 [exp]	16.4	0.7416
AT5G44150			unknown protein		Lus10018632 [exp]	17.7	0.7714

Compare expression of checked genes

Lus10029612 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.