Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33840 598 / 0 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (.1) AT1G28350 547 / 0 Nucleotidylyl transferase superfamily protein (.1) AT1G20960 115 / 3e-26 EMB1507 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) AT2G42270 103 / 2e-22 U5 small nuclear ribonucleoprotein helicase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032773 [exp] 741 / 0 AT2G33840 598 / 0.0 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (.1) Lus10009938 [exp] 339 / 9e-114 AT1G28350 290 / 5e-98 Nucleotidylyl transferase superfamily protein (.1) Lus10016048 [exp] 122 / 2e-28 AT1G20960 3558 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10025168 [exp] 122 / 2e-28 AT1G20960 3286 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10042629 [exp] 107 / 1e-25 AT1G20960 402 / 3e-128 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10030144 [exp] 61 / 8e-11 AT2G33840 57 / 3e-10 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G248900 [exp] 639 / 0 AT2G33840 602 / 0.0 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (.1) Potri.008G010201 [exp] 485 / 8e-170 AT2G33840 462 / 2e-164 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (.1) Potri.015G095500 [exp] 107 / 6e-24 AT1G20960 3326 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Potri.012G097300 [exp] 98 / 6e-21 AT1G20960 3440 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00579 [flax] [poplar] tRNA-synt_1b tRNA synthetases class I (W and Y) CL0039 [flax] [poplar] PF02889 [flax] [poplar] Sec63 Sec63 Brl domain
Representative CDS sequence Show only first row Show all	>Lus10029613 pacid=23152121 polypeptide=Lus10029613 locus=Lus10029613.g ID=Lus10029613.BGIv1.0 annot-version=v1.0 ATGTCTACGTCCGAGCAGAACCCTCTGCCTCCGTCGGAGGAGATGATTTCACTCTCCGTCGGCTCCTCCTCTCAATCTATTGCTTCTATATCACAGGAAA TGAGTCCCGATGAGAAGTTTCGGATAGTCAGAAGCGTCGGAGAAGAGTGTATCCAAGAGGATGAGCTGCTCAATCTTCTCACCAAAAAACCCCAGCCTAT TTGCTATGACGGATTCGAGCCTTCTGGCCGAATGCACATCGCTCAGGGAGTGATGAAGACGATTAATGTGAACAAGCTGACATCTGCTGGCTGCAAAGTC AAGATCTGGATTGCTGACTGGTTTGCCCAGCTGAACAACAAAATGGGCGGTGATCTGAAGAAAATCCGGGTGGTTGGGGAGTACTTGATTGAGATATGGA AAGCTGTTGGGATGGATCTTGAAGGTGGCAAAGTGGAGTTTTTATGGTCTTCTGATGAAATTAACTCTCGTGCTGCTGAGTACTGGCCAATTGTAATGGA CATTGCTCGCAGGAACACACTTGCTAGAATAACAAGGTGTGGTCAAATTATGGGTCGAACCGAAAAGGATGAGTTGACGGCTGCACAGATTCTCTACCCG TGTATGCAATGTGCCGACATATTTTTCCTCAAGGCTGATATTTGTCAACTTGGAATGGACCAACGCAAAGTGAATGTTCTTGCAAGAGAATACTGCGACG ATATCAAGAGGAAAAACAAGCCTATCATCTTATCTCACCACATGTTACCCGGTTTACAGGAAGGACAAGACAAGATGTCGAAAAGCGATCCCACTTCCTC TGTTTTCATGGAGGATGAAGAGGCAGAAGTGAATGTGAAGATAAAAAAAGCTTTCTGTCCCCCCAAGGTTGTTCAGGGGAATCCTTGCCTGGAATACATC AAATACATTGTTCTACCTTGGTTTAATGAGTTCAAGGTGGAACGTAATCCGCAAAATGGTGGAGATAAGACCTACACAGATTTTGAAGAACTTGTTGCTG ACTACGTAAGTGGGGCACTGCATCCTGGTGATCTGAAACCCTCGTTGTCAAAAGCATTGAACAAGATCCTGCAGCCTGTTCGTGATCATTTTGCCAAGGA TGCAAGAGCCAAGGACCTCTTAAAACGCGTCAAGTTGATGAAATATCCCTCTACTCCAAAATTGAGCAGTGAACAATCTTTGGAGTTGCTGACCAAATTG TCTTTCATGGCGATAGCAGTTACCTTTGTTAGGGTTTTAATCCAAGCAATGGTGGACGTCATATCAATCAATAACGGGTGGCTGAACCTAGCACTGCTGG CAATGGAAATCAGCCAGATGGTGACGCAAGCGATGTTGTGGGAGGAGGATGATTCCGAACCGCACTTGTCTAAGTTGATGATGGACATGGCGAGGTTCTA CTGCGGGCGCTACCCGTTGGTCCGTATGGTGTACAGGGTGGTGAAGGAGGCAGGGGATGATGGTGATGTGGCGAGTGTGCATGTGGAGTTGAAGAGGGAT CATGAACAAGGAAGGAGATCAGGGAAGGAGGAAGGAGGGTGGTGGGTGGTGGTGGGGGACACGGAGACGAATCGGGTGGTGGCGATTAAGAGGGTGATGT CGTTGAATAGGAAGGTGGAAGTGAAGCTGGAATTTAAAGAAGGACGTGATGATGATGCTGATGCTGATGCTGCAGGGAAACAGAGCTATGTGCTGTATTT GATGTCTGACTCTTTTCGGGGTTGCGACCAACGGTATGGTTTCACAGTGGAAGAGAGTGAACAAAGTAGAAGTACTAGTCGTAGGATGTTGGTCGGAAGA CACTGTTCGTTAGTTAGGTGCCTCTTCTAG
AA sequence Show only first row Show all	>Lus10029613 pacid=23152121 polypeptide=Lus10029613 locus=Lus10029613.g ID=Lus10029613.BGIv1.0 annot-version=v1.0 MSTSEQNPLPPSEEMISLSVGSSSQSIASISQEMSPDEKFRIVRSVGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKTINVNKLTSAGCKV KIWIADWFAQLNNKMGGDLKKIRVVGEYLIEIWKAVGMDLEGGKVEFLWSSDEINSRAAEYWPIVMDIARRNTLARITRCGQIMGRTEKDELTAAQILYP CMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQEGQDKMSKSDPTSSVFMEDEEAEVNVKIKKAFCPPKVVQGNPCLEYI KYIVLPWFNEFKVERNPQNGGDKTYTDFEELVADYVSGALHPGDLKPSLSKALNKILQPVRDHFAKDARAKDLLKRVKLMKYPSTPKLSSEQSLELLTKL SFMAIAVTFVRVLIQAMVDVISINNGWLNLALLAMEISQMVTQAMLWEEDDSEPHLSKLMMDMARFYCGRYPLVRMVYRVVKEAGDDGDVASVHVELKRD HEQGRRSGKEEGGWWVVVGDTETNRVVAIKRVMSLNRKVEVKLEFKEGRDDDADADAAGKQSYVLYLMSDSFRGCDQRYGFTVEESEQSRSTSRRMLVGR HCSLVRCLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33840			Tyrosyl-tRNA synthetase, class...		Lus10029613 [exp]	0	1
AT2G15730			P-loop containing nucleoside t...		Lus10042667 [exp]	6.5	0.7537
AT2G34040			Apoptosis inhibitory protein 5...		Lus10013953 [exp]	8.5	0.8068
AT3G13882			Ribosomal protein L34 (.1.2)		Lus10037626 [exp]	10.0	0.7803
AT1G03360		ATRRP4	ribosomal RNA processing 4 (.1...		Lus10008171 [exp]	10.0	0.7650
AT5G52890			AT hook motif-containing prote...		Lus10002064 [exp]	15.3	0.7165
AT1G78770		APC6	anaphase promoting complex 6 (...		Lus10012876 [exp]	21.4	0.7670
AT3G63290			2-oxoglutarate (2OG) and Fe(II...		Lus10004080 [exp]	22.6	0.6915
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10001726 [exp]	24.2	0.7000
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10006234 [exp]	30.6	0.7406
AT3G57000			nucleolar essential protein-re...		Lus10032054 [exp]	32.5	0.7544

Compare expression of checked genes

Lus10029613 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.