Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28900 776 / 0 Calcium-binding EF-hand family protein (.1) AT5G28850 775 / 0 Calcium-binding EF-hand family protein (.1.2) AT5G44090 762 / 0 Calcium-binding EF-hand family protein (.1) AT1G54450 760 / 0 Calcium-binding EF-hand family protein (.1) AT1G03960 707 / 0 Calcium-binding EF hand family protein (.1.2) AT5G18580 87 / 5e-18 FASS2, TON2, GDO, FS1, EMB40, FASS GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032772 [exp] 1061 / 0 AT5G28850 778 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10027963 [exp] 957 / 0 AT5G28850 771 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10021174 [exp] 950 / 0 AT5G28850 804 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10011811 [exp] 948 / 0 AT5G28850 797 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10008193 [exp] 943 / 0 AT5G28850 768 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10003628 [exp] 740 / 0 AT5G44090 775 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10008247 [exp] 728 / 0 AT5G44090 774 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10024917 [exp] 692 / 0 AT5G44090 751 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10022907 [exp] 686 / 0 AT5G44090 737 / 0.0 Calcium-binding EF-hand family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G047300 [exp] 852 / 0 AT5G28850 887 / 0.0 Calcium-binding EF-hand family protein (.1.2) Potri.019G019500 [exp] 847 / 0 AT5G28850 885 / 0.0 Calcium-binding EF-hand family protein (.1.2) Potri.002G035800 [exp] 795 / 0 AT5G44090 814 / 0.0 Calcium-binding EF-hand family protein (.1) Potri.005G227100 [exp] 762 / 0 AT5G44090 772 / 0.0 Calcium-binding EF-hand family protein (.1) Potri.010G022300 [exp] 89 / 1e-18 AT5G18580 835 / 0.0 GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1) Potri.008G215300 [exp] 83 / 1e-16 AT5G18580 830 / 0.0 GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029614 pacid=23152021 polypeptide=Lus10029614 locus=Lus10029614.g ID=Lus10029614.BGIv1.0 annot-version=v1.0 ATGGACGGAGCGGTATCAATCAGTGACGTGGCTGCTTTCCACCCGGACTTCCTTCAGATCCCGGAATTCTCCCCATTGGCCTTGAAGGCCAATCCTATCC TCGCCGAGCAGCTCTTCTTCCAGTGGCTTTCGCTTCCCGATTCTTCTCGATTGGTCAAATCTTCGCTTTCTGCGGCTAAGGCTGGGGAACCGTTGAATGC TGCCGGAAATTCCAGCAGTACGAATGCTGGTTCTGGTAGTGCTATACCGTCTATGTTCCCTTCTGGATGCACTCCACCACTTTCGCCTCGTAGCGTCTCT GGTTCTCCTCGTACTGTGAAGCACAGGCTTGGCCCTTCCTCTTTGGGTTCTCCACTGAAGGTAATCAGTGAGCCAGTGCGGGAAGTCATACCTCAGTTTT ACTTTAAGAATGGACGGCTGCCTCCAGAGGAGACAAGACAGCAATGCTTAGTTCGAATCGATGAACAATTTCATGGTCATGAGAATGGATTGCAACAAAA TGAATTTCAGTCCGTTACAAAGGATATCTGCAAGCTTCCGTCTTTTTTCTCCAGTTTATTGTTCAGAAGAATTGACGTTAATAGTGTTGGCATGGTGACA AGGGATCAGTTTGTTGAGTATTGGGTTAACGGAAACTTCTTAACGATGGATTTAGCTACTCAGATATACACTGTTCTCAAGCAACCAGATAGTGAATACC TCACTCAGGAGGATTTCAGACCCGTGTTACGGGAAATTTTGGCAACTCATCCAGGGTTAGAATTTTTGCAGAGCACTCCAGAGTTTCAAGAGAGATATGC TGAAACGGTGATATATAGAATATTTCACTATGTAAATAGATCAGGAACTGGTCATCTCACCCTCAAGGAGCTAAAGCGTTCAAACTTGATTGCTGCAATG CATCAAGTGGATGAAGAAGAAGACATTAATAAAGTTTTAAGGTACTTCTCTTACGAGCACTTCTATGTCATATACTGCAAATTCTGGGAGCTGGACACAG ACCACGATTTCTTCATTGACAAAGAGAACCTTATTCGATATGGCAACCATGCTCTTACGTATAGGATTGTCGATAGAGTTTTCTCTCAGGTTGCAAGGAA ATTTAGAAGCAAGGTTGAAGGCAAGATGGGTTATGAAGATTTTGTTTACTTCATACTCTCCGAGGAGGATAAATCTTCTGAACCTGGCATAGAGTTCTGG TTCAATTGCATTGATCTGGATGGAAATGGTTGCCTTACTTCCAACGAAATGCAATTCTTTTATGAAGAACAACTGCATCGGATGGAGTGCATGGCACAAG AACCAGTCACGTTTGAAGATATATTGTGTCAAATCATTGATATGATTGGTCCAGAGACTGAAGGTCTCGTCACACTGCGTGACATGAAACGTACCAAACT AGCTGCACATGTCTTCAACATTCTTTTCAATCTGAATAAGTTCATTGCCTTTGAAAGTCGGGATCCTTTCCTAATTCGTCAGGCAAGTGAACGAGAGAAC CCAACTTTGACAGAGTGGGACCGTTTTGCACATAGAGAGTATATAAGGCTTTCAATGGAAGACGATGCAGAGGACGTGTCGAATGGGAGTGGAGATGTCT GGGATGAATCTCTTGAGGCTCCCTTCTGA
AA sequence Show only first row Show all	>Lus10029614 pacid=23152021 polypeptide=Lus10029614 locus=Lus10029614.g ID=Lus10029614.BGIv1.0 annot-version=v1.0 MDGAVSISDVAAFHPDFLQIPEFSPLALKANPILAEQLFFQWLSLPDSSRLVKSSLSAAKAGEPLNAAGNSSSTNAGSGSAIPSMFPSGCTPPLSPRSVS GSPRTVKHRLGPSSLGSPLKVISEPVREVIPQFYFKNGRLPPEETRQQCLVRIDEQFHGHENGLQQNEFQSVTKDICKLPSFFSSLLFRRIDVNSVGMVT RDQFVEYWVNGNFLTMDLATQIYTVLKQPDSEYLTQEDFRPVLREILATHPGLEFLQSTPEFQERYAETVIYRIFHYVNRSGTGHLTLKELKRSNLIAAM HQVDEEEDINKVLRYFSYEHFYVIYCKFWELDTDHDFFIDKENLIRYGNHALTYRIVDRVFSQVARKFRSKVEGKMGYEDFVYFILSEEDKSSEPGIEFW FNCIDLDGNGCLTSNEMQFFYEEQLHRMECMAQEPVTFEDILCQIIDMIGPETEGLVTLRDMKRTKLAAHVFNILFNLNKFIAFESRDPFLIRQASEREN PTLTEWDRFAHREYIRLSMEDDAEDVSNGSGDVWDESLEAPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28850			Calcium-binding EF-hand family...		Lus10029614 [exp]	0	1
AT5G66030		ATGRIP, GRIP	Golgi-localized GRIP domain-co...		Lus10007427 [exp]	1.0	0.8770
AT2G19600		ATKEA4	K+ efflux antiporter 4, K+ eff...		Lus10040549 [exp]	4.2	0.8210
AT5G62600		MOS14	modifier of snc1-1, 14, ARM re...		Lus10042159 [exp]	11.0	0.8347
AT4G01210			glycosyl transferase family 1 ...		Lus10008732 [exp]	11.0	0.8267
AT1G73430			sec34-like family protein (.1....		Lus10015940 [exp]	11.0	0.8186
AT5G66030		ATGRIP, GRIP	Golgi-localized GRIP domain-co...		Lus10010675 [exp]	12.4	0.8018
AT5G58100			unknown protein		Lus10027581 [exp]	14.0	0.8314
AT3G13330		PA200	proteasome activating protein ...		Lus10008354 [exp]	15.7	0.8545
AT2G26770		SCAB1	stomatal closure-related actin...		Lus10026809 [exp]	16.4	0.7828
AT1G05960			ARM repeat superfamily protein...		Lus10006583 [exp]	20.6	0.8320

Compare expression of checked genes

Lus10029614 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.