Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60710 399 / 2e-139 ATB2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60690 399 / 3e-139 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60680 395 / 6e-138 AGD2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60730 392 / 8e-137 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2), NAD(P)-linked oxidoreductase superfamily protein (.3) AT1G60750 390 / 2e-136 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G10810 390 / 5e-136 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G04690 132 / 7e-36 KV-BETA1, KAB1 potassium channel beta subunit 1 (.1) AT1G06690 129 / 4e-34 NAD(P)-linked oxidoreductase superfamily protein (.1) AT4G33670 122 / 5e-32 NAD(P)-linked oxidoreductase superfamily protein (.1) AT5G53580 115 / 5e-29 AtPLR1 pyridoxal reductase 1, NAD(P)-linked oxidoreductase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041184 [exp] 495 / 3e-177 AT1G60690 374 / 1e-129 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041185 [exp] 473 / 2e-168 AT1G60750 384 / 2e-133 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10037437 [exp] 400 / 1e-139 AT1G60690 571 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041272 [exp] 396 / 2e-138 AT1G60710 571 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10006105 [exp] 396 / 4e-138 AT1G60690 554 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10023701 [exp] 382 / 1e-132 AT1G60690 527 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041303 [exp] 286 / 5e-96 AT1G60690 419 / 1e-148 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10037408 [exp] 239 / 2e-77 AT1G60730 311 / 6e-106 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2), NAD(P)-linked oxidoreductase superfamily protein (.3) Lus10010566 [exp] 174 / 3e-54 AT1G10810 198 / 3e-64 NAD(P)-linked oxidoreductase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G040000 [exp] 503 / 2e-180 AT1G60710 376 / 2e-130 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040100 [exp] 501 / 2e-179 AT1G60710 369 / 1e-127 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.008G158300 [exp] 485 / 2e-173 AT1G60680 389 / 2e-135 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G052400 [exp] 484 / 6e-173 AT1G60680 395 / 1e-137 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.014G147700 [exp] 386 / 3e-134 AT1G60710 559 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G234201 [exp] 385 / 4e-134 AT1G60710 547 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G234000 [exp] 379 / 8e-132 AT1G60690 524 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G207100 [exp] 135 / 1e-36 AT1G06690 526 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G207000 [exp] 133 / 7e-36 AT1G06690 589 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.001G052100 [exp] 131 / 2e-35 AT1G04690 602 / 0.0 potassium channel beta subunit 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00248 [flax] [poplar] Aldo_ket_red Aldo/keto reductase family
Representative CDS sequence Show only first row Show all	>Lus10029615 pacid=23152109 polypeptide=Lus10029615 locus=Lus10029615.g ID=Lus10029615.BGIv1.0 annot-version=v1.0 ATGGACTCCCAGCAGCTGCCTGTTCCAAGAGTCAAACTTGGAAGTCAGGGACTAGAGGTCTCAAAGTTGGGGTTTGGGTGTATGGGCTTGACCGGAATCT ACAATAATCCGTTGACTGATGAGGATGGAATCTCAATCTTGAAGAATGCCTTCAACAAGGGAGTAACATTCTTCGATACTGCAGATGTATACGGATCCAA TTTAAATGAGATCCTGGTTGGAAAGGCCTTAAAGGAGTTACCTAGAGAAAAAGTTCAAGTAGCCACAAAGTTTGGGTGTGTGATGGGAGCTTCTGGTATG GCAGCAAAAGGTAAACCTGAGTACGTTCGTTGGTCCTGTGAGGGGAGCTTGAAGCGTCTTGGCGTCGACTACATCGATCTGTATTATCAGCATCGGGTTG ATACCTCCACCCCCATAGAGGAAACTATGAGTGAGCTGAAGAAGCTGGTAGAAGAGGGGAAAATCAAGTACATTGGGCTGTCCGAGGCTAGTCCGGATAC CATAAGGAGAGCACATGCAGTTCATCCCATCACTGCTTTACAAATGGAGTGGTCTCTTTGGACTCGTGATATCGAGGATGAGATCATCCCTCTCTGCAGG GAACTTGGCATTGGGATTGTTCCTTACAGTCCTCTTGGCCGCGGGTTTTTCGCTGGCAAAGCAGTGGTGGAAGCTTTGCCTGCTGGTAGCGCATTGGCTA CACATCCTCGGTTTTCTGCGGAGAACTTGGACAAGAACAAAGTTATTTACGTACGAATCGAAAGCCTTGCTAAGAAGCATGGTTGCTCTCCTTCCCAATT AGCACTGGCGTGGGTTCTTCATCAGGGGGTTGATGTTGTACCTATTCCTGGTACTAGTAAAATTAAAAACCTGGAGGAAAACGTTGGGTCCTTAAAGGTG AGACTTTCAGAAGAGGAACTTAAAGAGCTTACTGATGCTGTACAACTCGAAGATGTTGCTGGCGTTAGAACTTACGAAAGCATGATGAATCTATCATGGC CGTTTGCTACTACACCTCCCAAGAATAACTAG
AA sequence Show only first row Show all	>Lus10029615 pacid=23152109 polypeptide=Lus10029615 locus=Lus10029615.g ID=Lus10029615.BGIv1.0 annot-version=v1.0 MDSQQLPVPRVKLGSQGLEVSKLGFGCMGLTGIYNNPLTDEDGISILKNAFNKGVTFFDTADVYGSNLNEILVGKALKELPREKVQVATKFGCVMGASGM AAKGKPEYVRWSCEGSLKRLGVDYIDLYYQHRVDTSTPIEETMSELKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITALQMEWSLWTRDIEDEIIPLCR ELGIGIVPYSPLGRGFFAGKAVVEALPAGSALATHPRFSAENLDKNKVIYVRIESLAKKHGCSPSQLALAWVLHQGVDVVPIPGTSKIKNLEENVGSLKV RLSEEELKELTDAVQLEDVAGVRTYESMMNLSWPFATTPPKNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60710		ATB2	NAD(P)-linked oxidoreductase s...		Lus10029615 [exp]	0	1
AT3G62260			Protein phosphatase 2C family ...		Lus10038058 [exp]	18.2	0.8065
AT1G60710		ATB2	NAD(P)-linked oxidoreductase s...		Lus10041272 [exp]	23.3	0.7912
AT5G01830			ARM repeat superfamily protein...		Lus10006090 [exp]	31.0	0.7893
					Lus10021100 [exp]	31.9	0.8043
AT4G19880			Glutathione S-transferase fami...		Lus10038348 [exp]	42.6	0.7369
AT1G50700		CPK33	calcium-dependent protein kina...		Lus10001146 [exp]	47.5	0.7871
AT3G30390			Transmembrane amino acid trans...		Lus10034353 [exp]	47.9	0.7597
AT4G25150			HAD superfamily, subfamily III...		Lus10007939 [exp]	49.6	0.7856
AT3G52880		ATMDAR1	monodehydroascorbate reductase...		Lus10008633 [exp]	53.6	0.7843
AT5G09570			Cox19-like CHCH family protein...		Lus10020462 [exp]	55.1	0.7855

Compare expression of checked genes

Lus10029615 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.