Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30780 455 / 7e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G48000 357 / 5e-118 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G48730 102 / 5e-23 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G06430 84 / 8e-17 AtPPR2, EMB2750 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G35130 78 / 4e-15 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G16010 74 / 8e-14 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G39620 73 / 2e-13 ATPPR5, EMB2453 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G53170 72 / 3e-13 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G02860 72 / 5e-13 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02820 70 / 1e-12 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042683 [exp] 969 / 0 AT2G30780 451 / 2e-155 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022787 [exp] 89 / 2e-18 AT5G48730 687 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011849 [exp] 89 / 2e-18 AT5G48730 681 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017134 [exp] 86 / 2e-17 AT2G35130 785 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10018318 [exp] 83 / 2e-16 AT2G35130 801 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10027552 [exp] 75 / 3e-14 AT3G06430 501 / 1e-175 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034721 [exp] 74 / 2e-13 AT2G37230 1041 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021645 [exp] 72 / 8e-13 AT2G37230 1041 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022128 [exp] 70 / 2e-12 AT2G15630 75 / 2e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G119600 [exp] 478 / 2e-164 AT2G30780 432 / 1e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G243600 [exp] 100 / 4e-22 AT5G48730 691 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G082400 [exp] 87 / 4e-18 AT4G39620 625 / 0.0 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G243000 [exp] 86 / 7e-18 AT2G30780 84 / 4e-17 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G153900 [exp] 86 / 9e-18 AT3G06430 717 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G058300 [exp] 84 / 3e-17 AT3G53170 618 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G123600 [exp] 85 / 4e-17 AT2G35130 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.008G098700 [exp] 80 / 8e-16 AT3G06430 692 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G180000 [exp] 74 / 9e-14 AT3G16010 950 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.001G297300 [exp] 74 / 1e-13 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10029620 pacid=23152070 polypeptide=Lus10029620 locus=Lus10029620.g ID=Lus10029620.BGIv1.0 annot-version=v1.0 ATGAAGCGCGTGCGCAGAATCTCCGACGCCGCCGCCGCGGCAGGGCAACCTGAGCAGCTGTTCTGCGTCCACCATAGATCACCTTCCAATCCCAGAATAG CCCTAACTTCTCCTTACTCCCTCATCCTCCCCAAATCCTCAGGTTGCGGCTTCTCCACGGAAATCAGCGTAGGCTCTTCTTCTTCTTCCTCTGTAGGAAT TTGTCGTAGTAGTAGCAGCGCGTATGAACTTTTCATCAATAAGTTCTCCCCTTCTGTTGTTGACACTCGTGGGAAGGAGCTTCTTGAGGAGAAAGTCTCC CGCTTGGCGTATACTCTGATTCAGCATGCTGAGGATTTCGATAAAGTTGCTGGCATTTTGGAGGATAAAGGCAGCTCCTTGTTCAGGAGGTATAGCGATG GATCCGCTTTCCTTGAGTTGTTGACCATTTTGGGTCGTTCCTCGCTGCAATTCGCTCTTGAGGTTTTTTACTGGAGGAGGACACAAACGGAGTTGAACGT TCCTTTAACATCAGAGGAGTACGCCAAGGCGATTGCCCTTGCCGGTAGGGTGAAGGATGTGGTACTTGCGGCAGAGATTTTCTACGAGGCTTGCAGTAAT CGTATCAAGTCAACTGCGACTTATAATGCGCTGATGAGTGCTTATATGATCAATGGTCTCTCTGATAAATGCACATTATTATTTAAGGAGTTGAAGAGGG AAGCAAATTGCCGCCCTTCGATGATTTCGTATAACATATTGATCTCGGTGTATGGCCGGCTGTTGCTAGTCAATAAGATGGAGGCTTGCTTCCTGGAGGC TAAGAATTTGAACCTCACCCCGAATTTGTGCACATACAACTATCTAATTGCTGGTTACTTAACCGCTTGGAATTGGGACGCCATGGAGAGAACTTTACAG AGGATGAAGTCGGCTTATATTGAGCCTGATATGCAGACTCGGTTACTTCTGCTTCGAGGCTATGCACATTCCGGTAATTTGGTGAAGATGGAAGAGATAT ATGAATTGGTTAAAGATCATGTTAATGTAAAGTCACGTCCTTTGATTCGCGCTATGATCTGTGCTTATTGCAAGAGTTCTGTTCCTGATAAGCTGAGTAA GATTGAGGCACTGCTTCAGCATATTCCACCGGAGGAGTATATGCCTTGGTTGAATGTGTTGCTAATTAGGGTGTATGCTGAAGAAGGTTGCTTTGAGAAG ATGGAAAAGTCGATTTTCGAGGCTTTTGAGCATCATACCACTGTAACAGCTCACCGTGTGATGAAAGCTATAACGTCGGGTTATTTCAAAAGCAATGCTG TCGATAAACTCGCGGTGTTTGTAAAACGGGCTGAAGCTGCTGGATGGAGGATATGTCGTAGTTTGTATCATTGCCAAATGGTGATGTATGGATTGGAAAA GCGATTGAAGGAGATGGAGAGTGTTCTCTCCGAGATGGATAATTTCAACCTGGATTGCACAAAGAAAACATTTTACATAATGTACAGGTCTTATTTAGTG TGGGATCAAAGACATAAGGCCAAACAAGTAATAGGATTGCTTTACAAGCGTGGACATGGGATTCCTGTTGATGCTTCTTTGTTATAA
AA sequence Show only first row Show all	>Lus10029620 pacid=23152070 polypeptide=Lus10029620 locus=Lus10029620.g ID=Lus10029620.BGIv1.0 annot-version=v1.0 MKRVRRISDAAAAAGQPEQLFCVHHRSPSNPRIALTSPYSLILPKSSGCGFSTEISVGSSSSSSVGICRSSSSAYELFINKFSPSVVDTRGKELLEEKVS RLAYTLIQHAEDFDKVAGILEDKGSSLFRRYSDGSAFLELLTILGRSSLQFALEVFYWRRTQTELNVPLTSEEYAKAIALAGRVKDVVLAAEIFYEACSN RIKSTATYNALMSAYMINGLSDKCTLLFKELKREANCRPSMISYNILISVYGRLLLVNKMEACFLEAKNLNLTPNLCTYNYLIAGYLTAWNWDAMERTLQ RMKSAYIEPDMQTRLLLLRGYAHSGNLVKMEEIYELVKDHVNVKSRPLIRAMICAYCKSSVPDKLSKIEALLQHIPPEEYMPWLNVLLIRVYAEEGCFEK MEKSIFEAFEHHTTVTAHRVMKAITSGYFKSNAVDKLAVFVKRAEAAGWRICRSLYHCQMVMYGLEKRLKEMESVLSEMDNFNLDCTKKTFYIMYRSYLV WDQRHKAKQVIGLLYKRGHGIPVDASLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30780			Tetratricopeptide repeat (TPR)...		Lus10029620 [exp]	0	1
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Lus10012890 [exp]	1.4	0.9063
AT1G36990			unknown protein		Lus10042697 [exp]	6.3	0.9019
AT5G46920			Intron maturase, type II famil...		Lus10003020 [exp]	6.5	0.9046
AT1G36990			unknown protein		Lus10029655 [exp]	6.6	0.9055
AT2G37310			Pentatricopeptide repeat (PPR)...		Lus10025273 [exp]	7.0	0.9001
AT1G06730			pfkB-like carbohydrate kinase ...		Lus10018778 [exp]	7.4	0.9015
AT1G12770		ISE1, EMB1586	INCREASED SIZE EXCLUSION LIMIT...		Lus10038140 [exp]	8.5	0.9006
AT1G31840			Tetratricopeptide repeat (TPR)...		Lus10009465 [exp]	12.0	0.8693
AT5G63290			Radical SAM superfamily protei...		Lus10001104 [exp]	13.1	0.8692
AT1G04840			Tetratricopeptide repeat (TPR)...		Lus10029793 [exp]	14.2	0.8021

Compare expression of checked genes

Lus10029620 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.