Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03020 659 / 0 transducin family protein / WD-40 repeat family protein (.1.2) AT2G43770 80 / 3e-16 Transducin/WD40 repeat-like superfamily protein (.1) AT4G29830 73 / 6e-14 VIP3 vernalization independence 3, Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 67 / 2e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 62 / 5e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 60 / 9e-10 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 61 / 1e-09 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G61210 61 / 1e-09 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G02730 58 / 5e-09 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 58 / 8e-09 TAF5 TBP-associated factor 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042682 [exp] 838 / 0 AT4G03020 749 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10012779 [exp] 553 / 0 AT4G03020 629 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10033996 [exp] 552 / 0 AT4G03020 629 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10012230 [exp] 75 / 2e-14 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002860 [exp] 74 / 4e-14 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021059 [exp] 71 / 5e-13 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 71 / 5e-13 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10011224 [exp] 71 / 2e-12 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 66 / 1e-11 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G136000 [exp] 694 / 0 AT4G03020 741 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.010G026800 [exp] 597 / 0 AT4G03020 676 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.008G197200 [exp] 481 / 2e-169 AT4G03020 534 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.019G096900 [exp] 80 / 2e-16 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 66 / 2e-11 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.008G002300 [exp] 66 / 2e-11 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 66 / 3e-11 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 64 / 3e-11 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 64 / 1e-10 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.011G045500 [exp] 64 / 1e-10 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10029621 pacid=23152054 polypeptide=Lus10029621 locus=Lus10029621.g ID=Lus10029621.BGIv1.0 annot-version=v1.0 ATGGGTTATGCCATGAGTAGATTGGAGATAGAATCTCAGCTGTGTGACGAGGAAGAGACTGTCAATGAAGTTGGTGATGGAAGCCAACAGCACAAGTCTC TTAACAAATCGGTAGAGAAATTGGACCATGAAGTTGCCCAGGATACTAACCTAAAATCTCAGCCCCATAGACGGCTCGAGAAGGAGATACCTGGGAAGAG ACAGTTCCCAGTCTCTCCTGTAAAGATGTTGGCCGGTCGAGAAGGTAATTTTTCCGGAAGGGGGAGGTTCTCGCGAGCTGATCGGTGTCATATGCTCAGC AGATATTTGCCTGCTGATGGCCCATGGCTTGTCGATCGAATGAATAGCCGAGCTTATGTCTCGCAGTTTTCTTCTGATGGTACCTTGTTTGTTGCTGGCT TTCAGGGAAGCCATATTAAAGTATACAATGTCGAGAAAGGGTGGAAAGTTCAGAAGGATATTATTGCCAGAAGTTTGCGTTGGACAGTTACGGATACCTC TCTGTCTCCGGATCAACGGTTTCTTGTCTATGCCAGTATGTGCCCTATTGTGCACATTGTTAATATCGCATCATCAACAACGGAATCAGTTGCAAATGTA ACGGAGATTCACGATGGTTTAGACTTTTCTGATGAAGACGATGGGGGCTATGCTTTCGGGATCTTCTCAGTAAAATTTTCTACTGATGGTCGTGAACTAG TTGCTGGAAGTAGTGATGATGCTATATGTGTCTATGATCTCGAAACTAATAAGCTCTCTCTCAGAATCCTAGCACACACATCTGATGTGAACACCGTCTG TTTTGCTGACGAGAGTGGGCATCTGATATACTCCGGGAGTGATGATAATCTCTGCAAGGTGTGGGATAGACGTTGCTTCATAGCAAAAGGGAAGCCTGCA GGAGTCCTAACGGGACATATCGAAGGAATTACAGATATAGACAGCCGTGGAGATGGCCGATATTTAATATCAAATGGAAAAGATCAGACAATCAAACTTT GGGATATCAGGAAAATGGCCCCCAATGCTACAAGCTCTTTAGGGATCAGGAATTATGAATGGGATTACAGATGGATGGACTACCCACCACCAGCTAGAGA CTTGAAGCATCCATGCGATCTGTCCGTGGCTACTTATAAAGGTCACTCGGTTCTCCGAACGCTTATTCGCTGCTATTTCTCACCAACCTATAGCACCGGC CAGAAATACATTTACACCGGATCTCACGACTCTTCTGTTTATATTTATGATGTGGTAAGTGAATCGCCAAGAAACGACTACGCAGAAGGCAATACTACGA TGTCTGAGACACTACACCAAATCTGTCGAAAGCAGTAA
AA sequence Show only first row Show all	>Lus10029621 pacid=23152054 polypeptide=Lus10029621 locus=Lus10029621.g ID=Lus10029621.BGIv1.0 annot-version=v1.0 MGYAMSRLEIESQLCDEEETVNEVGDGSQQHKSLNKSVEKLDHEVAQDTNLKSQPHRRLEKEIPGKRQFPVSPVKMLAGREGNFSGRGRFSRADRCHMLS RYLPADGPWLVDRMNSRAYVSQFSSDGTLFVAGFQGSHIKVYNVEKGWKVQKDIIARSLRWTVTDTSLSPDQRFLVYASMCPIVHIVNIASSTTESVANV TEIHDGLDFSDEDDGGYAFGIFSVKFSTDGRELVAGSSDDAICVYDLETNKLSLRILAHTSDVNTVCFADESGHLIYSGSDDNLCKVWDRRCFIAKGKPA GVLTGHIEGITDIDSRGDGRYLISNGKDQTIKLWDIRKMAPNATSSLGIRNYEWDYRWMDYPPPARDLKHPCDLSVATYKGHSVLRTLIRCYFSPTYSTG QKYIYTGSHDSSVYIYDVVSESPRNDYAEGNTTMSETLHQICRKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03020			transducin family protein / WD...		Lus10029621 [exp]	0	1
AT4G03020			transducin family protein / WD...		Lus10042682 [exp]	4.9	0.9028
AT5G01260			Carbohydrate-binding-like fold...		Lus10002495 [exp]	6.6	0.9071
AT3G61710		AtBECLIN1, ATAT...	BECLIN1, AUTOPHAGY 6 (.1.2.3)		Lus10010126 [exp]	6.7	0.9014
AT1G50440			RING/FYVE/PHD zinc finger supe...		Lus10033381 [exp]	8.9	0.8941
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10034055 [exp]	9.5	0.8793
AT2G45530			RING/U-box superfamily protein...		Lus10008286 [exp]	15.8	0.8936
AT5G43920			transducin family protein / WD...		Lus10011916 [exp]	16.2	0.8925
AT1G55280			Lipase/lipooxygenase, PLAT/LH2...		Lus10039181 [exp]	16.4	0.8799
AT5G46550			DNA-binding bromodomain-contai...		Lus10011989 [exp]	16.5	0.8809
AT2G47900	TUB	AtTLP3	tubby like protein 3 (.1.2.3)		Lus10012803 [exp]	16.9	0.8593

Compare expression of checked genes

Lus10029621 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.