Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03440 533 / 0 Leucine-rich repeat (LRR) family protein (.1) AT4G03010 531 / 0 RNI-like superfamily protein (.1) AT3G17640 279 / 6e-91 Leucine-rich repeat (LRR) family protein (.1) AT3G59510 172 / 3e-49 Leucine-rich repeat (LRR) family protein (.1) AT5G66330 131 / 3e-34 Leucine-rich repeat (LRR) family protein (.1) AT5G62230 134 / 5e-34 ERL1 ERECTA-like 1 (.1.2) AT4G08850 134 / 5e-34 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT2G15320 130 / 6e-34 Leucine-rich repeat (LRR) family protein (.1) AT5G07280 129 / 3e-32 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT3G51740 127 / 1e-31 IMK2 inflorescence meristem receptor-like kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008190 [exp] 583 / 0 AT1G03440 576 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10031601 [exp] 508 / 0 AT1G03440 463 / 2e-163 Leucine-rich repeat (LRR) family protein (.1) Lus10042681 [exp] 288 / 1e-95 AT4G03010 205 / 1e-63 RNI-like superfamily protein (.1) Lus10027968 [exp] 167 / 2e-51 AT1G03440 160 / 2e-49 Leucine-rich repeat (LRR) family protein (.1) Lus10025578 [exp] 148 / 1e-40 AT3G59510 388 / 6e-133 Leucine-rich repeat (LRR) family protein (.1) Lus10007417 [exp] 147 / 3e-40 AT3G59510 379 / 2e-129 Leucine-rich repeat (LRR) family protein (.1) Lus10019356 [exp] 147 / 5e-40 AT3G59510 377 / 1e-128 Leucine-rich repeat (LRR) family protein (.1) Lus10036251 [exp] 139 / 2e-35 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10038392 [exp] 134 / 7e-34 AT4G20140 1376 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G136100 [exp] 553 / 0 AT1G03440 541 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.011G023500 [exp] 298 / 4e-98 AT3G17640 350 / 2e-118 Leucine-rich repeat (LRR) family protein (.1) Potri.004G001000 [exp] 287 / 8e-94 AT3G17640 386 / 1e-132 Leucine-rich repeat (LRR) family protein (.1) Potri.017G028600 [exp] 142 / 2e-38 AT3G59510 372 / 8e-127 Leucine-rich repeat (LRR) family protein (.1) Potri.017G028400 [exp] 137 / 4e-36 AT3G59510 366 / 6e-124 Leucine-rich repeat (LRR) family protein (.1) Potri.005G234400 [exp] 135 / 1e-35 AT5G66330 412 / 3e-142 Leucine-rich repeat (LRR) family protein (.1) Potri.015G132200 [exp] 134 / 5e-34 AT5G62230 1404 / 0.0 ERECTA-like 1 (.1.2) Potri.009G064300 [exp] 128 / 2e-33 AT3G12610 480 / 8e-171 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Potri.016G126300 [exp] 131 / 5e-33 AT3G51740 1038 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.004G065400 [exp] 127 / 1e-31 AT5G46330 1176 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10029622 pacid=23151975 polypeptide=Lus10029622 locus=Lus10029622.g ID=Lus10029622.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCCTCCTACATTCTTCTGCTTTTACTGTTACTACTCACACCCACATATGCAATTCTCAACCCTGTCGATTTCCTGGCTCTCCAATCCCTCC GCAACTCTCTCGATGACATGCCCGGATCCAACTTCTTCACCTCATGGGACTTCACCGCCGACCCCTGCAACTTCACCGGCGTTTACTGCCAATCCCACCG TGTCGTCGCTCTCAATTTGGGCGACCCGAGTGCCGGCTCTCCGGGTCTCATCGGCAACCTCGACCCGGGCGTCGGTAAGCTAACTGCTCTCGCCGAGCTC ACCATAGTCCCTGGTCGGGTCATGGGCTCCATACCAGACTCCATCTCCCAGCTCACCGAGCTCCGATTCCTAGCGATCAACCGCAACTTCCTCACCGGCG CTATTCCCGATTCCATGTCCCGCCTCACGAATCTCAGAACCCTCGATCTCAGCTACAACCAGCTCACGGGAACCGTCCCGCCGTCGATTGGGTCTATACC CGGACTATCCAATCTCATCCTCTGCCACAACCACCTCTGGGGTTCCGTCCCTGCCTTCGGTTCGCGGAGCCTGACCCGAGTAGAGCTGTCTCACAACCAG CTCAGCGGCTCGATTCCTCCGTATTCCTTCCCTTCCTCGCTGCAGTACCTCTCTCTTTCCAGGAACCGGCTGGTCGGGCCGGTAGATGGCGTCCTGAACC GGTTGGATCAGCTCAACTTTCTCGACTTGAGCGTGAACCAGTTCTCCGGTTCCATCCCGGGTCGAATCTTCACTTTCCCGATAAACAACCTCCACCTGCA GAGGAATTTCTTCACCGGTCCGGTTCAACCGGGTGGACATAAGGTTTTGATTCCGACAGTTGATCTCAGCTATAACAGACTTTCCGGTCGGATATCGTCA ATGTTTTCTACGGTGCAGAATCTGTACCTGAATAATAACCGGTTTATCGGGGAGGTTCCTAGTAGCCTGGTGGAGAGATTGCTTGCGGGGAAAATGGAGA CGTTGTATTTGCAGCATAATTATTTGACGGGGATCAAGATTAATCCGGCAGCGGGGATTCCGGCGAGGAGCTCGATGTGCTTGCAGTACAATTGTATGGT GCCGCCGGTGCAGAGTCCTTGTCCGTTGAAGGCTGGGAGGCAGAAGGTGAGGCCGTTTGATCAGTGCAAGGAGTGGAAGGGGTAA
AA sequence Show only first row Show all	>Lus10029622 pacid=23151975 polypeptide=Lus10029622 locus=Lus10029622.g ID=Lus10029622.BGIv1.0 annot-version=v1.0 MASSSYILLLLLLLLTPTYAILNPVDFLALQSLRNSLDDMPGSNFFTSWDFTADPCNFTGVYCQSHRVVALNLGDPSAGSPGLIGNLDPGVGKLTALAEL TIVPGRVMGSIPDSISQLTELRFLAINRNFLTGAIPDSMSRLTNLRTLDLSYNQLTGTVPPSIGSIPGLSNLILCHNHLWGSVPAFGSRSLTRVELSHNQ LSGSIPPYSFPSSLQYLSLSRNRLVGPVDGVLNRLDQLNFLDLSVNQFSGSIPGRIFTFPINNLHLQRNFFTGPVQPGGHKVLIPTVDLSYNRLSGRISS MFSTVQNLYLNNNRFIGEVPSSLVERLLAGKMETLYLQHNYLTGIKINPAAGIPARSSMCLQYNCMVPPVQSPCPLKAGRQKVRPFDQCKEWKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03440			Leucine-rich repeat (LRR) fami...		Lus10029622 [exp]	0	1
AT4G40060	HD	ATHB16 ,ATHB-16	homeobox protein 16 (.1)		Lus10023159 [exp]	1.0	0.8759
AT5G15100		ATPIN8, PIN8	PIN-FORMED 8, Auxin efflux car...		Lus10013422 [exp]	2.4	0.8276
AT4G39700			Heavy metal transport/detoxifi...		Lus10022508 [exp]	6.7	0.8236
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Lus10019927 [exp]	6.9	0.7479
AT4G03010			RNI-like superfamily protein (...		Lus10042681 [exp]	14.7	0.8210
AT4G39955			alpha/beta-Hydrolases superfam...		Lus10023147 [exp]	16.2	0.7088
AT3G27030			unknown protein		Lus10041551 [exp]	20.1	0.7642
AT5G09310			unknown protein		Lus10041297 [exp]	20.2	0.7217
AT3G15420			Transcription factor TFIIIC, t...		Lus10023017 [exp]	21.9	0.7781
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10036526 [exp]	21.9	0.6982

Compare expression of checked genes

Lus10029622 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.