Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48010 260 / 4e-79 RKF3 receptor-like kinase in in flowers 3 (.1) AT1G11050 184 / 5e-51 Protein kinase superfamily protein (.1) AT3G09010 149 / 5e-40 Protein kinase superfamily protein (.1) AT1G16670 147 / 5e-39 Protein kinase superfamily protein (.1) AT4G02010 142 / 6e-36 Protein kinase superfamily protein (.1) AT2G42960 140 / 7e-36 Protein kinase superfamily protein (.1) AT3G59110 140 / 8e-36 Protein kinase superfamily protein (.1) AT1G70450 137 / 9e-36 Protein kinase superfamily protein (.1) AT1G29720 142 / 2e-35 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56120 141 / 4e-35 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042679 [exp] 535 / 0 AT2G48010 678 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10027971 [exp] 338 / 8e-109 AT2G48010 646 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10008186 [exp] 338 / 9e-109 AT2G48010 647 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10042678 [exp] 299 / 4e-93 AT2G48010 781 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10029626 [exp] 293 / 1e-92 AT2G48010 672 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10027970 [exp] 284 / 2e-88 AT2G48010 653 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10027972 [exp] 280 / 4e-87 AT2G48010 601 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10008187 [exp] 275 / 6e-85 AT2G48010 660 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10028549 [exp] 196 / 8e-58 AT1G11050 448 / 8e-155 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G136400 [exp] 297 / 1e-92 AT2G48010 794 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.014G136466 [exp] 296 / 2e-92 AT2G48010 792 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.005G040200 [exp] 228 / 7e-67 AT2G48010 613 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.013G028000 [exp] 218 / 3e-64 AT2G48010 497 / 6e-171 receptor-like kinase in in flowers 3 (.1) Potri.005G181800 [exp] 192 / 6e-54 AT1G11050 604 / 0.0 Protein kinase superfamily protein (.1) Potri.017G133000 [exp] 185 / 4e-51 AT1G11050 830 / 0.0 Protein kinase superfamily protein (.1) Potri.004G084900 [exp] 185 / 6e-51 AT1G11050 821 / 0.0 Protein kinase superfamily protein (.1) Potri.017G132800 [exp] 185 / 7e-51 AT1G11050 805 / 0.0 Protein kinase superfamily protein (.1) Potri.017G132250 [exp] 175 / 2e-50 AT1G11050 430 / 2e-148 Protein kinase superfamily protein (.1) Potri.011G049600 [exp] 156 / 1e-42 AT3G09010 427 / 2e-149 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10029624 pacid=23152066 polypeptide=Lus10029624 locus=Lus10029624.g ID=Lus10029624.BGIv1.0 annot-version=v1.0 ATGTCCGCCGTCCACCCCCGTCTCCTCCTCTTCCTCTTCCTCATCGCATCAGCTCTCACCCCACCCCTCGTCCTATCCCAGAACAACAACAGCACCACTG ATCCTTGCCCACTCAACTTCTCCATCCTCCGCCAGCTCGTAGCCAGCTCCGACCTCCCTTCTGCCGTCGACCCTTCCCAAAACTGTCAGTACATCCGCCA GGGCCTCCGCCTCGTCCAGTCCGACTACCTCCGCCGCACCAACAACTTCCTCCCGCCACTCGCCGACGCCGACGCCTGCTGGCGCTCTTACCAACGCTTC GCCGACGATGTCCTCCCAAACTTTGACATCCGCTCCTCCTGCGGCTTCCGCACCAGCTGGATCTCCCAGGGATGCGTCAACCTCACTACCAGAGCCGATT TCGAGTCCAGGATCGTTAGATCCTCTCTGGACGACGTCGTTTCCAACTGCAACCAGTCCCTCGAGAACCGCGCCCCTTGCGCCGGTTGCGTCTCCTCGCT CTCTCGCGTCCAGGGCTTGTACTTCACCGGTCCTTCCGTCGGTAACGTCTCCACCTGTTCTGCTTATCCTTCGATTTACGCCGCCGCGTTTGTCAATTTC CTAGGCCCTACCAATACCGGAACCGATAAGTGCTTGTTCTTGCTCGATTACACTTCCAATAACGGTCGCAGCAAGAAATCGAAAGCCCTGATTCCGGCTG TTTCCGCCGCGTGCGGCGTCGTATTGTTGCTCATTGTCGTGATTGGAGGATTCTGTTTGGCGAGGAAATGGAATAAGAAGAAGAAGAAGAAAGAAAAGGA GGACAAAATAGAGATGGGATTGGATGCTGGATTGGTGAAATTCGATTACGAAGAGATCAAGAAAGCAACCAACGATTTCTCCGTTGATAACATCATAGGA AGAGGAGGGTTTGGAAACGTGTACAGAGGAAAAATGACAGACGGGGCACAACCTACTATCATCCACAGAGACATCAAGGCTTCCAACATTTTGTTGGACG ACGAGTTCGAAGCCAAACTTGCTGATTTCGGGCTGGCGAAATCAAACCCGGAAGGAATGACACATCTCAGCACGAGAGTGGCCGGTACGTGGGGGTACTT GGCTCCCGAGTATGCTTTGTATGGGCAGTTGACAGAGAGGAGCGATGTGTATAGCTACGGTGTCGTTCTGCTCGAGCTTTTGAGTGGGAAGAAGGCTCTT ATAAGGCACGATGGTGGTGGTGGGGATGTGAGTCAACCTTATCTTCTTGCGGATATGGCATGGTCGTTGGCTAAAGAAGGAAGAGCGATTGATCTGGTGG AAGAAGGGATGCCGGAGAGAGGCGAGGGTAATGTGTTGGAGCGGTACATTATGGTAGGGGTGCTATGTTCGCACCCGGAAATGCAGGCGAGGCCGACGAT GGAGCAGGTTGTGAAGATGTTGGAGTCGGAGCAGATGTCGATTCCTTCTATTCCAAACCGGCCTATGTTTGTGATGGGTGGTGGTGATGATGTTGAGATG TCGATGGACAGCACGGGATTCTCGTCATCTGGGTATCATCAACCTTATGGGGTTAAAGCTGATGCTGGTGGAGGACACAAAGATGGAGAGTCGGACTCTG GGACATCCGGGTCTCCGTGA
AA sequence Show only first row Show all	>Lus10029624 pacid=23152066 polypeptide=Lus10029624 locus=Lus10029624.g ID=Lus10029624.BGIv1.0 annot-version=v1.0 MSAVHPRLLLFLFLIASALTPPLVLSQNNNSTTDPCPLNFSILRQLVASSDLPSAVDPSQNCQYIRQGLRLVQSDYLRRTNNFLPPLADADACWRSYQRF ADDVLPNFDIRSSCGFRTSWISQGCVNLTTRADFESRIVRSSLDDVVSNCNQSLENRAPCAGCVSSLSRVQGLYFTGPSVGNVSTCSAYPSIYAAAFVNF LGPTNTGTDKCLFLLDYTSNNGRSKKSKALIPAVSAACGVVLLLIVVIGGFCLARKWNKKKKKKEKEDKIEMGLDAGLVKFDYEEIKKATNDFSVDNIIG RGGFGNVYRGKMTDGAQPTIIHRDIKASNILLDDEFEAKLADFGLAKSNPEGMTHLSTRVAGTWGYLAPEYALYGQLTERSDVYSYGVVLLELLSGKKAL IRHDGGGGDVSQPYLLADMAWSLAKEGRAIDLVEEGMPERGEGNVLERYIMVGVLCSHPEMQARPTMEQVVKMLESEQMSIPSIPNRPMFVMGGGDDVEM SMDSTGFSSSGYHQPYGVKADAGGGHKDGESDSGTSGSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10029624 [exp]	0	1
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10024372 [exp]	1.4	0.8460
AT3G57120			Protein kinase superfamily pro...		Lus10016113 [exp]	4.2	0.7651
AT4G36910		CBSX1, CDCP2, L...	LOSS OF THE TIMING OF ET AND J...		Lus10041576 [exp]	5.2	0.8296
AT1G71100		RSW10	RADIAL SWELLING 10, Ribose 5-p...		Lus10042951 [exp]	10.7	0.8315
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Lus10023077 [exp]	13.4	0.8013
AT5G37930			Protein with RING/U-box and TR...		Lus10028535 [exp]	18.7	0.7599
AT2G01060	GARP		myb-like HTH transcriptional r...		Lus10039124 [exp]	20.5	0.7392
AT3G10920		MSD1, MEE33, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10034222 [exp]	21.2	0.8171
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Lus10036224 [exp]	21.5	0.7616
AT5G19290			alpha/beta-Hydrolases superfam...		Lus10041399 [exp]	23.6	0.7536

Compare expression of checked genes

Lus10029624 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.