Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48010 643 / 0 RKF3 receptor-like kinase in in flowers 3 (.1) AT1G11050 319 / 7e-102 Protein kinase superfamily protein (.1) AT5G18500 258 / 1e-79 Protein kinase superfamily protein (.1.2) AT3G59110 251 / 6e-77 Protein kinase superfamily protein (.1) AT1G09440 249 / 1e-76 Protein kinase superfamily protein (.1) AT1G56720 249 / 2e-76 Protein kinase superfamily protein (.1.2.3) AT3G09010 244 / 2e-75 Protein kinase superfamily protein (.1) AT3G26940 243 / 6e-75 CDG1 CONSTITUTIVE DIFFERENTIAL GROWTH 1, Protein kinase superfamily protein (.1) AT3G24540 245 / 1e-74 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT2G42960 243 / 5e-74 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042678 [exp] 979 / 0 AT2G48010 781 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10008186 [exp] 618 / 0 AT2G48010 647 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10027971 [exp] 614 / 0 AT2G48010 646 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10042679 [exp] 610 / 0 AT2G48010 678 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10008187 [exp] 589 / 0 AT2G48010 660 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10027970 [exp] 575 / 0 AT2G48010 653 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10027972 [exp] 538 / 0 AT2G48010 601 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10028549 [exp] 321 / 6e-106 AT1G11050 448 / 8e-155 Protein kinase superfamily protein (.1) Lus10018855 [exp] 319 / 7e-104 AT1G11050 473 / 7e-163 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G136466 [exp] 696 / 0 AT2G48010 792 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.014G136400 [exp] 694 / 0 AT2G48010 794 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.005G040200 [exp] 521 / 2e-180 AT2G48010 613 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.013G028000 [exp] 508 / 1e-176 AT2G48010 497 / 6e-171 receptor-like kinase in in flowers 3 (.1) Potri.017G132800 [exp] 343 / 1e-110 AT1G11050 805 / 0.0 Protein kinase superfamily protein (.1) Potri.004G084900 [exp] 340 / 3e-109 AT1G11050 821 / 0.0 Protein kinase superfamily protein (.1) Potri.017G133000 [exp] 339 / 4e-109 AT1G11050 830 / 0.0 Protein kinase superfamily protein (.1) Potri.005G181800 [exp] 330 / 3e-106 AT1G11050 604 / 0.0 Protein kinase superfamily protein (.1) Potri.010G001600 [exp] 264 / 2e-82 AT5G18500 635 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G204000 [exp] 261 / 3e-82 AT1G52540 427 / 7e-150 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10029626 pacid=23152084 polypeptide=Lus10029626 locus=Lus10029626.g ID=Lus10029626.BGIv1.0 annot-version=v1.0 ATGAACATCACCACCAGACAGCAATTCGAAACCCTAGTTACCAATTCCTCCCTCTCCGACGTCGTATCCAGCTGCGACCAGCCTCTTGAGAACAATTCCC CTTGCGCCGCTTGTACCGCCAGCTTGTCCAGAGTCCAGGCTTTGCACCTGACAGGGAACTCCGTCGGGAATGTTTCTGATTGCCAAGCCTATCCGTCGAT CTACGCCGCTGCGTTTCTCAATCCCTTAGGCCCCACTGATAAAGGTACTGCTAAGTGCTTGTTTTTGCTTGATTTCGGTTCTAGTAAAACCACTAGTAAG AACAAGAAGAAGAAGAAGAAATTAGTGGTTGTGGCGGTTTGTGTTGGATTGATTGTTGCGGTTTTTATTGTGATCGGCGGATTATGGTTCTGGAAGAGGA AGTATGGGATGATGAAGAGGAAGAGAAGGAAGTTGAACAGATTAGGGATTGATAATAATAATCCTTTGGGGAAATCCACTAGTTTGGAGAGCATTAACGA GAGCACGACTCTGGTGAAGTTTAAATTCGACGAGATCAAGAAAGCAACCAGGAATTTCGCCAGGGATCACATCATAGGTAGAGGAGGGTATGGAAATGTA TACAAAGGCAGGTTAATGGACGGATCCGAGGTTGCGGTGAAGAGGTTTAAGAACTGTTCAGCTGCCGGAGATGCAAGCTTTGCACATGAAGTCGAGGTGA TCGCCAGCGTAAGGCACGTAAATCTCGTGGCATTGAGAGGCTACTGCATCGCCACTACTTCCATGGAAGGTCATCAGAGGATAATCGTTTGCGAATTGAT GAGAAACGGTAGCCTGCACGATCACCTGCTGGCCGGTAACGAAAATGGGAAACTCAGCTGGCCGATTCGGCAGAAGATTGCATTAGGGACGGCGAAAGGA TTGGCTTACTTGCACTACGGGGCACAGCCGGGAATCATTCACCGAGACATCAAGGCGAACAATATCCTGCTGGACGACAATTTTGATGCTAAAGTTGCGG ACTTTGGGCTGGCGAAGTTCAACCCGGAAGGAATGACGCATTTAAGCACCAGGGTGGCTGGGACGATGGGGTATGTGGCGCCGGAGTATGCCCTGTACGG GCAACTGACGGAGAGAAGCGATGTTTATAGTTATGGGGTGGTGTTGCTAGAGCTCCTGAGCGGGAAGAAAGCACTGTTTAAACCTGATGGTGGTGAAGAT GATGCAGCCCAGCCATGTCTTCTTACGGATTGGGCATGGTCGCTTGTGAAGGAAGGAAGAGGGCTGGATGTGGTTGAAGACGGGATGCCAGAGCTAGGTG CTCCTGACGTGTTGGAGAGATATGTTCTAGTTGCGGTTCTTTGTTCACACCCTCAGCTGTATGCTAGGCCGACGATGGACCAGGTGGTGAAGATGTTGGA AACCGAGTTGGTGGTTCCGTCCATCCCGCATCGGTCGATACCTTTGGTATCAGAAATGGACGATATCGAGAGATCGGTGAGCAGCACTTCTGGATCGGGG CAGCTGTTTTCCCCTTCCGGGTATCACTCATTTGGGTTTGGTCCTTCTGGGACAAAGGAAGAGGAAGTTCCGGAATCCAGGACATCGTAA
AA sequence Show only first row Show all	>Lus10029626 pacid=23152084 polypeptide=Lus10029626 locus=Lus10029626.g ID=Lus10029626.BGIv1.0 annot-version=v1.0 MNITTRQQFETLVTNSSLSDVVSSCDQPLENNSPCAACTASLSRVQALHLTGNSVGNVSDCQAYPSIYAAAFLNPLGPTDKGTAKCLFLLDFGSSKTTSK NKKKKKKLVVVAVCVGLIVAVFIVIGGLWFWKRKYGMMKRKRRKLNRLGIDNNNPLGKSTSLESINESTTLVKFKFDEIKKATRNFARDHIIGRGGYGNV YKGRLMDGSEVAVKRFKNCSAAGDASFAHEVEVIASVRHVNLVALRGYCIATTSMEGHQRIIVCELMRNGSLHDHLLAGNENGKLSWPIRQKIALGTAKG LAYLHYGAQPGIIHRDIKANNILLDDNFDAKVADFGLAKFNPEGMTHLSTRVAGTMGYVAPEYALYGQLTERSDVYSYGVVLLELLSGKKALFKPDGGED DAAQPCLLTDWAWSLVKEGRGLDVVEDGMPELGAPDVLERYVLVAVLCSHPQLYARPTMDQVVKMLETELVVPSIPHRSIPLVSEMDDIERSVSSTSGSG QLFSPSGYHSFGFGPSGTKEEEVPESRTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10029626 [exp]	0	1
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10029918 [exp]	3.7	0.9449
AT5G10820			Major facilitator superfamily ...		Lus10026890 [exp]	4.7	0.9331
AT4G36740	HD	HB-5, ATHB40	homeobox protein 40 (.1)		Lus10041719 [exp]	7.2	0.9292
AT3G24120	GARP		Homeodomain-like superfamily p...		Lus10038735 [exp]	7.7	0.9234
AT4G16330			2-oxoglutarate (2OG) and Fe(II...		Lus10037292 [exp]	9.7	0.9155
AT1G11380			PLAC8 family protein (.1)		Lus10002586 [exp]	10.4	0.9321
AT2G24260	bHLH	LRL1, bHLH066	LJRHL1-like 1 (.1)		Lus10021846 [exp]	11.7	0.9263
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Lus10014423 [exp]	12.7	0.9145
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10031510 [exp]	12.8	0.9284
AT3G06240			F-box family protein (.1)		Lus10001105 [exp]	13.9	0.9283

Compare expression of checked genes

Lus10029626 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.