Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015961 [exp] 146 / 6e-44 ND / Lus10033089 [exp] 80 / 4e-17 ND / Lus10030062 [exp] 60 / 5e-11 ND / Lus10009742 [exp] 56 / 4e-09 ND / Lus10010621 [exp] 49 / 4e-07 ND / Lus10032678 [exp] 48 / 2e-06 ND / Lus10034725 [exp] 41 / 0.0001 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029627 pacid=23152136 polypeptide=Lus10029627 locus=Lus10029627.g ID=Lus10029627.BGIv1.0 annot-version=v1.0 ATGGAAAAGTGTAACCATTATTGCCTCTCTACTTATCCATTCTACAATGTTGACTCTTCCATTTTTGAATTTTATTTTGTTACCTCTTTTTGCTTCCCCA GTCTCTCCTTCTATCTCTTCTTCCCTTCTTATCCAGAACAACATTTTCTCCCCGATTTCTTCGACGACGGTTGGGCAGCGGTTGTGTCATCCTCATCTTC TCAACGGTTTCCAAAAGACGGTGGCCGTAAGCATAAAGAAAACAAGGCTAATCCTTTTGGCACTCCCACAAACAAGATCTTCAACACTGATGAAAGAGAC GGAAGACAACAAAGGTGCGAAACCGGGAAAGTAAAACCTAAGAAGAGGAAACAAATCTCTTCTTCAGTTGAATCCGAATCAAATTCCTTGAAGGACAAAC CCCATGCCAAATCGGGCCCCAAGAAGATGAAGAAGGCTGACGAGGGAACTAGTAAGAAGAAGAAGAGTCGCTTCATCCAATTTCGATGCAACACTGGTAG GATATTCCAGATGAAAGATCTCGTGGACAAACACAAGAGGATGAACTGGATGAGAAAGCTATTGATGGACGCCAGCTTCCACGGATTGCTGTCTATAAAG TTGAAACTCATCAACAAGGAAATCTCTGATTTTCTGATTGGATGCTACCGAGCTCCGCACTAG
AA sequence Show only first row Show all	>Lus10029627 pacid=23152136 polypeptide=Lus10029627 locus=Lus10029627.g ID=Lus10029627.BGIv1.0 annot-version=v1.0 MEKCNHYCLSTYPFYNVDSSIFEFYFVTSFCFPSLSFYLFFPSYPEQHFLPDFFDDGWAAVVSSSSSQRFPKDGGRKHKENKANPFGTPTNKIFNTDERD GRQQRCETGKVKPKKRKQISSSVESESNSLKDKPHAKSGPKKMKKADEGTSKKKKSRFIQFRCNTGRIFQMKDLVDKHKRMNWMRKLLMDASFHGLLSIK LKLINKEISDFLIGCYRAPH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10029627 [exp]	0	1
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10024176 [exp]	2.0	0.9031
AT1G54680			unknown protein		Lus10018965 [exp]	7.2	0.8790
AT5G03260		LAC11	laccase 11 (.1)		Lus10013800 [exp]	8.9	0.7983
AT1G54680			unknown protein		Lus10033821 [exp]	9.5	0.8607
AT5G19500			Tryptophan/tyrosine permease (...		Lus10036099 [exp]	13.4	0.8367
AT5G36930			Disease resistance protein (TI...		Lus10011240 [exp]	14.1	0.7565
AT5G02180			Transmembrane amino acid trans...		Lus10024374 [exp]	14.5	0.8325
AT2G37210		LOG3	LONELY GUY 3, lysine decarboxy...		Lus10026513 [exp]	18.2	0.8246
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10026152 [exp]	19.3	0.8453
AT1G27170			transmembrane receptors;ATP bi...		Lus10011241 [exp]	22.4	0.7222

Compare expression of checked genes

Lus10029627 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.