Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48020 634 / 0 Major facilitator superfamily protein (.1.2) AT5G18840 550 / 0 Major facilitator superfamily protein (.1) AT3G05150 533 / 0 Major facilitator superfamily protein (.1) AT1G54730 473 / 6e-165 Major facilitator superfamily protein (.1.2.3) AT1G08920 412 / 7e-141 ESL1 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) AT1G08930 407 / 2e-138 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT3G20460 392 / 7e-133 Major facilitator superfamily protein (.1) AT5G27350 383 / 1e-129 SFP1 Major facilitator superfamily protein (.1) AT1G08890 379 / 7e-128 Major facilitator superfamily protein (.1) AT3G05165 377 / 3e-127 Major facilitator superfamily protein (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042676 [exp] 763 / 0 AT2G48020 603 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008183 [exp] 695 / 0 AT2G48020 657 / 0.0 Major facilitator superfamily protein (.1.2) Lus10027975 [exp] 663 / 0 AT2G48020 626 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008182 [exp] 654 / 0 AT2G48020 613 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008184 [exp] 645 / 0 AT2G48020 593 / 0.0 Major facilitator superfamily protein (.1.2) Lus10027976 [exp] 631 / 0 AT2G48020 598 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008179 [exp] 626 / 0 AT2G48020 590 / 0.0 Major facilitator superfamily protein (.1.2) Lus10012780 [exp] 568 / 0 AT5G18840 685 / 0.0 Major facilitator superfamily protein (.1) Lus10035354 [exp] 472 / 3e-164 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G212900 [exp] 667 / 0 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.014G136600 [exp] 619 / 0 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.010G026500 [exp] 572 / 0 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.013G027500 [exp] 473 / 9e-165 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.005G037000 [exp] 414 / 2e-141 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027700 [exp] 412 / 1e-140 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.005G039900 [exp] 409 / 2e-139 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.005G040000 [exp] 397 / 8e-135 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.013G027800 [exp] 388 / 2e-131 AT5G27360 405 / 6e-138 Major facilitator superfamily protein (.1) Potri.007G024300 [exp] 383 / 3e-129 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10029629 pacid=23152166 polypeptide=Lus10029629 locus=Lus10029629.g ID=Lus10029629.BGIv1.0 annot-version=v1.0 ATGAGGGAGCCACTCATTCGAAACAACTTAGCATCATCGGACCAGGGCGATCATGGCTCGAGGCTGGAGGATGATCATAGCCTCTGGATGGTTTACCTCA GCACTTTCGTTGCTGTTTGTGGCTCTTACGAATTCGGATGTTGCGTGGGATTTTCGTCGCCGACACAAGATGCTATCAGGGAAGATCTGTCGCTGTCTCT GTCCCAGTATTCGGTATTTGGTTCGATTTTGACATTCGGGGCGATGTTCGGTGCAGCACTTAGCGGAAAGTTAGCTGATCTCTTTGGCCGTAAAGGGGCT ATGAGATTGTCCAGTGCCTTCTGTGTTGTTGGTTGGCTTGCCATATATTTTGCTCAGGGGGCAATGGCATTGGACATTGGCAGATGGGCAACTGGCTTTG GAATGGGAGTGTTCTCCTACGTGGTGCCTATTTTCATATCCGAAATTGCGCCAAAGAATCTTCGAGGAGCTCTGGCTACCTTGAACCAGGTTATGATCTG TGCTGGAGTGTCTGCATCATTCATCGTAGGCACATTCATAACGTGGAGGACTCTTGCCTTATCCGGGTTGGTTCCTTGTGCTGTTCTACTTTTCGGGTTA ACTCTCATACCGGAATCTCCCAGATGGCTGGCTAAGACAGGACATGAGAAGGACTTCGAGGCAGCGTTGCAGAAGCTTCGAGGCAAGGATGCTAACATAG CAAGGGAGGCAGCTGAAATCCAGGAATACATCGAGACACTCGACCGGCTTCCCAAAGTGAAGCTATTGGACTTGTTCCACGCTAGATACATAGGATCAGT CATTATAGGAGTTGGGTTGATGGTGGTTCAACAATTTGGAGGGATAAATGCAGTGTGCTTTTATGCCAGCAACATTTTAAAGTCAGCAGGAGTTTCCTCC AGCCTTGGAACTATTATCTATGCCATTGTTCAGCTGATAGTGACAGTCCTAATTACACAAGTGGTAGACAGAGCTGGAAGGAAGCCTCTTTTACTGGTTT CGGCATCCGGGTTGGTGGTTTCGTGCTTGCTAATAAGCGTTTCGTTCTATCTCAAGACCCATCAGTTGGCCCTTGACTCTGTTTCACTGCTGGCTATATC TGGCATACTGTTGTATGTTGCATCGTTTTCTGCAGGGATGGGTGCAGTCCCTTGGGTCATCATGTCAGAGATATTCCCAATAAACATAAAGGGTGTAGCT GGAGGTTTGGCAACACTGGTGAACTGGATTGGCGCTTGGGCAGTTTCATACACATTCAACTTCCTCTCTTCCTGGAGTTCCTACGGTACGTTTCTTGTGT ATGCAGCAGTGAACGTAGCAGGAATATTGTTTGTGGTGAAGGTGGTACCAGAAACCAAAGGCAGAACTTTAGAACAGATTCAAGCAGCCATCAGTTAA
AA sequence Show only first row Show all	>Lus10029629 pacid=23152166 polypeptide=Lus10029629 locus=Lus10029629.g ID=Lus10029629.BGIv1.0 annot-version=v1.0 MREPLIRNNLASSDQGDHGSRLEDDHSLWMVYLSTFVAVCGSYEFGCCVGFSSPTQDAIREDLSLSLSQYSVFGSILTFGAMFGAALSGKLADLFGRKGA MRLSSAFCVVGWLAIYFAQGAMALDIGRWATGFGMGVFSYVVPIFISEIAPKNLRGALATLNQVMICAGVSASFIVGTFITWRTLALSGLVPCAVLLFGL TLIPESPRWLAKTGHEKDFEAALQKLRGKDANIAREAAEIQEYIETLDRLPKVKLLDLFHARYIGSVIIGVGLMVVQQFGGINAVCFYASNILKSAGVSS SLGTIIYAIVQLIVTVLITQVVDRAGRKPLLLVSASGLVVSCLLISVSFYLKTHQLALDSVSLLAISGILLYVASFSAGMGAVPWVIMSEIFPINIKGVA GGLATLVNWIGAWAVSYTFNFLSSWSSYGTFLVYAAVNVAGILFVVKVVPETKGRTLEQIQAAIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G48020			Major facilitator superfamily ...		Lus10029629 [exp]	0	1
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Lus10014711 [exp]	5.3	0.7307
					Lus10041324 [exp]	7.1	0.7112
AT5G04350			Plant self-incompatibility pro...		Lus10029381 [exp]	9.8	0.7186
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10003262 [exp]	9.9	0.7308
AT2G25270			unknown protein		Lus10014341 [exp]	10.7	0.7218
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10034969 [exp]	13.4	0.7088
					Lus10013529 [exp]	16.2	0.6990
					Lus10028048 [exp]	17.3	0.6989
					Lus10026785 [exp]	18.2	0.6989
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10006971 [exp]	18.5	0.6696

Compare expression of checked genes

Lus10029629 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.