Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48030 479 / 2e-167 DNAse I-like superfamily protein (.1) AT3G21530 416 / 1e-142 DNAse I-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042675 [exp] 775 / 0 AT2G48030 484 / 2e-169 DNAse I-like superfamily protein (.1) Lus10027979 [exp] 557 / 0 AT2G48030 479 / 3e-167 DNAse I-like superfamily protein (.1) Lus10008177 [exp] 554 / 0 AT2G48030 486 / 5e-170 DNAse I-like superfamily protein (.1) Lus10012772 [exp] 424 / 2e-145 AT3G21530 504 / 2e-177 DNAse I-like superfamily protein (.1) Lus10034003 [exp] 423 / 2e-144 AT3G21530 504 / 2e-176 DNAse I-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G136900 [exp] 550 / 0 AT2G48030 516 / 0.0 DNAse I-like superfamily protein (.1) Potri.008G198100 [exp] 442 / 2e-152 AT3G21530 506 / 1e-177 DNAse I-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10029630 pacid=23152163 polypeptide=Lus10029630 locus=Lus10029630.g ID=Lus10029630.BGIv1.0 annot-version=v1.0 ATGTTCAAGGTCTTGAACAGGAGGCTCCGCCTTCTCTATTCCCGTCTCCGGTGGCGCCACAACCTCCTCCGCTCCTCCGACATTCAGAAGCTCGGGGGGA AACCCAGTTCCAAGTCAGGGAACGAATCTTCCACGGTTCACCCGAACAACCATCTGGGTAAACCGGAAGCAGAGGAGGAACGAGTCAAACCGGTAAAGGT CGCTACTTTCAACGCTGCTCTGTTCTCCATGGCTCCGGCCGTACCTCCTCAGCCGGGAACTTCTTCCATTTCTCACCTAGACTTGGGTTTCGGAAGGAGC AAGAGTTCGATCGACTACATAACGAGAACAAACTCCGCGAACGACCGCCCGCTTAAAGGCATACTGAAGCCGTCGCCGTCGCCGCTGCATCCCAACTGCG GCGGCGAGGAGGAAGATTACTCAGTCAAGCAGCAGAAATTTGCTAGGTCGAGGTTGAGGGTTTCCATCAACCTCCCCGACAACGAGATTTCGATCAGGCA GCAGAGCTTCCGAGAAGGCGGTGAGGAAAACTGCAACGGCGGCAGAGTTGTAAGGGCGTGGAAAGCGGCGGCGCCGGCCGCGAGCAGGTCGAAGAGTTTG GGTTTTTCGGAAATGGGGAAAAGGTCGGTGGTGGAGGTGCTAAAGGAGCTGGATGCTGATATTCTGGCACTGCAAGAAGTGAAAGCAGAGGAAGAGAAGG AGATGAAGCCATTGTCGGATTTAGCTGCTGCTCTAGGGATGTATTACGTTTTTGCAGAGAGCTGGGCGCCTGAATACGGCAACGCTATACTCTCCAAATG GCCCATCAAGCAATGGAATGTTCAGAAGATCTTCGATGATTCTGATTTCAGGAATGTGTTGAAGGCAACTATCAACGTGCCTAACATTGGGGAGGTCAAC TTCCACTGCACCCACTTGGATCACCTCGACGAGAAGTGGAGAATGAAGCAAGTGAACGCGATCATGCAGTCGAGCGAAGGCCCCTATCTTTTAGCTGGAG GGCTCAATTCGCTCGACGAAACTGACTACTCTGAAGATAGGTGGATCGACATTGTCAAGTACTATGAGGAGATGGGAAAGCCAACGCCAAAGGCTGAAGT GATGAGGTTTCTGAAGAGCAAGCAGTATACGGATGCCAAGGATTTTGCTGGGGAATGTGAGTCTGTGGTCATGATAGCCAAAGGACAAAATGTACAAGGG ACTTGTAAATACGGGACTAGGGTGGACTACATCGTTTCGTCCTCGAATTCGCCCTATAAGTTTGTTCCGGGATCGTATTCGGTTCTGTCTTCAAAGGGGA CATCCGATCATCACATAGTGAAGGTTGATATTGTCAGAGTAGATAGCAGTAGTAAAGATAATCATAGTGACAGTGAATTAGCAGCAAAGAAAAGGCAAAA ACAACTATATAGATAA
AA sequence Show only first row Show all	>Lus10029630 pacid=23152163 polypeptide=Lus10029630 locus=Lus10029630.g ID=Lus10029630.BGIv1.0 annot-version=v1.0 MFKVLNRRLRLLYSRLRWRHNLLRSSDIQKLGGKPSSKSGNESSTVHPNNHLGKPEAEEERVKPVKVATFNAALFSMAPAVPPQPGTSSISHLDLGFGRS KSSIDYITRTNSANDRPLKGILKPSPSPLHPNCGGEEEDYSVKQQKFARSRLRVSINLPDNEISIRQQSFREGGEENCNGGRVVRAWKAAAPAASRSKSL GFSEMGKRSVVEVLKELDADILALQEVKAEEEKEMKPLSDLAAALGMYYVFAESWAPEYGNAILSKWPIKQWNVQKIFDDSDFRNVLKATINVPNIGEVN FHCTHLDHLDEKWRMKQVNAIMQSSEGPYLLAGGLNSLDETDYSEDRWIDIVKYYEEMGKPTPKAEVMRFLKSKQYTDAKDFAGECESVVMIAKGQNVQG TCKYGTRVDYIVSSSNSPYKFVPGSYSVLSSKGTSDHHIVKVDIVRVDSSSKDNHSDSELAAKKRQKQLYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G48030			DNAse I-like superfamily prote...		Lus10029630 [exp]	0	1
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10000988 [exp]	6.3	0.7777
AT5G62960			unknown protein		Lus10032130 [exp]	6.9	0.8082
					Lus10024749 [exp]	7.0	0.7333
AT1G73390			Endosomal targeting BRO1-like ...		Lus10042289 [exp]	8.5	0.8030
AT3G27970			Exonuclease family protein (.1...		Lus10008787 [exp]	11.0	0.7685
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Lus10037789 [exp]	12.1	0.7516
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10038639 [exp]	15.6	0.7764
AT5G16000		NIK1	NSP-interacting kinase 1 (.1)		Lus10034413 [exp]	18.0	0.7408
AT1G75440		UBC16	ubiquitin-conjugating enzyme 1...		Lus10028341 [exp]	20.6	0.7844
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10001377 [exp]	26.5	0.7690

Compare expression of checked genes

Lus10029630 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.