Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63030 209 / 6e-70 MBD4 methyl-CPG-binding domain 4 (.1) AT4G22745 195 / 4e-64 MBD1 methyl-CPG-binding domain 1 (.1) AT5G35330 112 / 8e-31 MBD2, MBD02, ATMBD2 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3) AT4G00416 100 / 2e-27 MBD3 methyl-CPG-binding domain 3 (.1) AT5G35338 77 / 3e-18 MBD12 methyl-CPG-binding domain 12 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042674 [exp] 334 / 1e-119 AT3G63030 207 / 4e-69 methyl-CPG-binding domain 4 (.1) Lus10008176 [exp] 258 / 4e-89 AT3G63030 204 / 3e-67 methyl-CPG-binding domain 4 (.1) Lus10027980 [exp] 256 / 3e-88 AT3G63030 206 / 4e-68 methyl-CPG-binding domain 4 (.1) Lus10021593 [exp] 120 / 3e-33 AT5G35330 283 / 1e-94 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3) Lus10017146 [exp] 120 / 3e-33 AT5G35330 283 / 5e-95 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G137100 [exp] 241 / 1e-82 AT3G63030 223 / 4e-75 methyl-CPG-binding domain 4 (.1) Potri.002G212600 [exp] 236 / 1e-80 AT3G63030 221 / 3e-74 methyl-CPG-binding domain 4 (.1) Potri.018G145500 [exp] 113 / 2e-30 AT5G35330 282 / 2e-94 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3) Potri.006G077600 [exp] 112 / 2e-30 AT5G35330 257 / 6e-85 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3) Potri.018G146700 [exp] 111 / 6e-30 AT5G35330 286 / 6e-96 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07496 [flax] [poplar] zf-CW CW-type Zinc Finger CL0081 [flax] [poplar] MBD-like PF01429 [flax] [poplar] MBD Methyl-CpG binding domain
Representative CDS sequence Show only first row Show all	>Lus10029631 pacid=23151957 polypeptide=Lus10029631 locus=Lus10029631.g ID=Lus10029631.BGIv1.0 annot-version=v1.0 ATGGTTCGGGTAATCGATACATATACTGCACAATGCCATACTTGCCTGAAATGGAGAGTGATTCCAACTGAAGAAGAGTACGAGGAAATCAGAAGCAAGA GTATCGCTGACAAATTTACCTGCAAGTCCAAAGGCCAGTCCTGCGACGATCCTGCTGATATAGAGTACAATGCATCTCGGACCTGGGTCATAGACAAACC CGGAGTTCCGAAAACCCCCAAGGGTTTCAAAAGACACCTGGTTCTCAGACGAGACTTCTCCAAAATGGATGCTTACTATATAACTCCAACTGGGAAGAAA CTCCGGACGAGAAATGAAATCTCTGCTTTCATAGCGTCCAAACCGGAGTACAAACATGTCAAAGTCGACGACTTCAACTTCACAACTCCCAAGGTCATGG AAGACACCATTCCGGAGGAAGCCTTGGAAAAGTCAGCTCCTGGTGGCAACAGCAGCAAGAGAAGTAAGGTTGGTAAGCAAGAAGCTTGA
AA sequence Show only first row Show all	>Lus10029631 pacid=23151957 polypeptide=Lus10029631 locus=Lus10029631.g ID=Lus10029631.BGIv1.0 annot-version=v1.0 MVRVIDTYTAQCHTCLKWRVIPTEEEYEEIRSKSIADKFTCKSKGQSCDDPADIEYNASRTWVIDKPGVPKTPKGFKRHLVLRRDFSKMDAYYITPTGKK LRTRNEISAFIASKPEYKHVKVDDFNFTTPKVMEDTIPEEALEKSAPGGNSSKRSKVGKQEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Lus10029631 [exp]	0	1
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10002733 [exp]	4.8	0.8595
AT3G58030			RING/U-box superfamily protein...		Lus10021063 [exp]	6.9	0.8480
AT2G37860		LCD1	LOWER CELL DENSITY 1, Protein ...		Lus10012657 [exp]	7.5	0.8514
AT4G22380			Ribosomal protein L7Ae/L30e/S1...		Lus10015295 [exp]	24.5	0.7803
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10039595 [exp]	25.5	0.8444
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10029220 [exp]	28.0	0.8333
AT3G58680		MBF1B, ATMBF1B	multiprotein bridging factor 1...		Lus10013686 [exp]	29.1	0.8360
AT5G14440			Surfeit locus protein 2 (SURF2...		Lus10022288 [exp]	30.3	0.8176
AT1G31870			unknown protein		Lus10033140 [exp]	33.7	0.8274
AT3G58680		MBF1B, ATMBF1B	multiprotein bridging factor 1...		Lus10017945 [exp]	34.6	0.7679

Compare expression of checked genes

Lus10029631 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.