Plant FIBer expression Database

Lus10029632 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G48070 248 / 7e-84 RPH1 resistance to phytophthora 1 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042673
[exp]
307 / 7e-105 AT4G02980 259 / 1e-86 endoplasmic reticulum auxin binding protein 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G137300
[exp]
263 / 3e-89 AT2G48070 233 / 4e-78 resistance to phytophthora 1 (.1.2.3)
PFAM info
Representative CDS sequence
>Lus10029632 pacid=23151951 polypeptide=Lus10029632 locus=Lus10029632.g ID=Lus10029632.BGIv1.0 annot-version=v1.0
ATGCAGTCGCCGATCTCCACCTCTCTCTGTCACCCCAGCCACCACTCCTTGGCATGGACACCGTCGGGAATCAGAACATTCCGTCCACAACTCCAATTCC
AATTAGGCAGAAGCAGAGCTCCTCGGATACGCCCTAACGCAACCGACGAAATTAACACGCAACCTCCGCCGCCGCCGATTGAGCTGGAGAATAAGAAGAA
CGAAGTTGGAATTAAACCAGACGAAACAGTAGGTGCAGTGACTTCAACATCCGTACAATCCCCGGTAGCGATCGACGGTAAAGAGCTGAAAAAGGCTGTA
CAGAAGACGGCGGCAACATTTGCTCCAAGGGCGTCGACTGCGAGTAAGAATCCGGCGGTTCCAGGTACGACGCTGTACAGCGTGTTCGAGATTCAAGCGT
ATGCGTCGATGCTGATCGGTGGAGCTCTTTCTTTCAATCTGATATTCCCTTCCGATGAGCCTGATCTTTGGAGATTGATGGGGATGTGGTCAATCTGGAT
GTTCACGATTCCGTCGCTGAGAGCTCGAGATTGCTCGAAGAAGGAGAAAGAGGCGCTGAATTACCTGTTCATCCTGGTCCCTTTGATCAACGTTCTGATT
CCCTTCTTCTGGAAGTCGTTTGCAGTAGTTTGGTCTGCTGATACAGTGGCTTTCTTCGCCATGTACGCCTGGAAGGTGGGTATAACCCTTCTGATTCCTG
TACACATTCTTCAGCTTTTGAATGGAAATGCATGA
AA sequence
>Lus10029632 pacid=23151951 polypeptide=Lus10029632 locus=Lus10029632.g ID=Lus10029632.BGIv1.0 annot-version=v1.0
MQSPISTSLCHPSHHSLAWTPSGIRTFRPQLQFQLGRSRAPRIRPNATDEINTQPPPPPIELENKKNEVGIKPDETVGAVTSTSVQSPVAIDGKELKKAV
QKTAATFAPRASTASKNPAVPGTTLYSVFEIQAYASMLIGGALSFNLIFPSDEPDLWRLMGMWSIWMFTIPSLRARDCSKKEKEALNYLFILVPLINVLI
PFFWKSFAVVWSADTVAFFAMYAWKVGITLLIPVHILQLLNGNA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G48070 RPH1 resistance to phytophthora 1 (... Lus10029632
[exp]
0 1
AT4G02980 ABP1 endoplasmic reticulum auxin bi... Lus10042673
[exp]
1.0 0.9326
AT3G48200 unknown protein Lus10039976
[exp]
1.4 0.9218
AT3G04550 unknown protein Lus10042554
[exp]
2.4 0.9033
AT5G42070 unknown protein Lus10032408
[exp]
6.3 0.9107
AT2G29650 PHT4;1, ANTR1 anion transporter 1, phosphate... Lus10018218
[exp]
7.3 0.9210
AT5G35220 EGY1 ETHYLENE-DEPENDENT GRAVITROPIS... Lus10020304
[exp]
9.5 0.8921
AT2G41120 unknown protein Lus10033361
[exp]
11.9 0.8264
AT1G49380 cytochrome c biogenesis protei... Lus10011311
[exp]
12.6 0.9052
AT5G36930 Disease resistance protein (TI... Lus10004719
[exp]
13.3 0.8601
AT1G26220 Acyl-CoA N-acyltransferases (N... Lus10029099
[exp]
14.9 0.8827

Lus10029632 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.