Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02980 268 / 1e-92 ABP1 endoplasmic reticulum auxin binding protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042673 [exp] 327 / 9e-114 AT4G02980 259 / 1e-86 endoplasmic reticulum auxin binding protein 1 (.1) Lus10027985 [exp] 314 / 9e-111 AT4G02980 269 / 8e-93 endoplasmic reticulum auxin binding protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G212400 [exp] 303 / 3e-106 AT4G02980 276 / 8e-96 endoplasmic reticulum auxin binding protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF02041 [flax] [poplar] Auxin_BP Auxin binding protein
Representative CDS sequence Show only first row Show all	>Lus10029633 pacid=23151944 polypeptide=Lus10029633 locus=Lus10029633.g ID=Lus10029633.BGIv1.0 annot-version=v1.0 ATGGTGTCGATTCAGCTTGTATTATGCTTTTCCAGTTTTCTAGCACTGGCTGCTGCAGCAACGGCTTCACAATGCTCCATCAAGGGGTTTCCACTTGTAC GAAATATCAGTGAGCTCCCGCAAGATAACTATGGTAGGCCTGGTTTCTCCCATACAACAGTAGCAGGTTCTGTCCTGCATGGGATGAAAGAGGTTGAAGT ATGGCTTCAAACATTTTCCCCAGGCTCAAGGACTCCAATCCACAGGCACTCGTGCGAAGAAGTATTTGTTGTGCTTAAAGGAAGTGGGAAACTCTATATC GCTACTGACTCCCACCACAAGCATCCAGGCAAACCGGAAGAACATTTCATCTTTCCCAATAGCACATTCCACATCCCAGTGAATGATGTACACCAGGTAT GGAATACAGACGAGCACGAGGATTTGCAAGTACTTGTCGTTATATCTCGACCACCAGTGAAAGTGTTCATATACGAAGACTGGTCGATGCCGCACACAGC AGCGAAGCTGAAGTTCCCGTACTATTGGGACGAAGAATGCCTGGAAACACCAGCAAAAGATGAGCTCTAG
AA sequence Show only first row Show all	>Lus10029633 pacid=23151944 polypeptide=Lus10029633 locus=Lus10029633.g ID=Lus10029633.BGIv1.0 annot-version=v1.0 MVSIQLVLCFSSFLALAAAATASQCSIKGFPLVRNISELPQDNYGRPGFSHTTVAGSVLHGMKEVEVWLQTFSPGSRTPIHRHSCEEVFVVLKGSGKLYI ATDSHHKHPGKPEEHFIFPNSTFHIPVNDVHQVWNTDEHEDLQVLVVISRPPVKVFIYEDWSMPHTAAKLKFPYYWDEECLETPAKDEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02980		ABP1	endoplasmic reticulum auxin bi...		Lus10029633 [exp]	0	1
AT2G30410		TFCA, KIS	TUBULIN FOLDING FACTOR A, tubu...		Lus10031896 [exp]	1.0	0.9000
AT2G27020		PAG1	20S proteasome alpha subunit G...		Lus10037416 [exp]	6.0	0.8886
AT3G17210		ATHS1	A. THALIANA HEAT STABLE PROTEI...		Lus10037823 [exp]	6.5	0.8500
AT2G34520		RPS14	mitochondrial ribosomal protei...		Lus10034657 [exp]	7.5	0.8611
AT1G52600			Peptidase S24/S26A/S26B/S26C f...		Lus10023131 [exp]	9.5	0.8468
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10034073 [exp]	14.1	0.8588
AT3G05070			unknown protein		Lus10026367 [exp]	16.0	0.8365
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Lus10041194 [exp]	16.6	0.8507
AT5G07960			unknown protein		Lus10021623 [exp]	18.7	0.8229
AT1G76860			Small nuclear ribonucleoprotei...		Lus10011293 [exp]	22.6	0.8143

Compare expression of checked genes

Lus10029633 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.