Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03350 234 / 2e-71 BSD domain-containing protein (.1) AT4G13110 164 / 2e-46 BSD domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042670 [exp] 593 / 0 AT1G03350 305 / 7e-99 BSD domain-containing protein (.1) Lus10012761 [exp] 167 / 3e-46 AT1G03350 241 / 1e-76 BSD domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G199000 [exp] 194 / 5e-57 AT4G13110 179 / 4e-53 BSD domain-containing protein (.1) Potri.008G199100 [exp] 181 / 5e-51 AT4G13110 215 / 8e-66 BSD domain-containing protein (.1) Potri.010G028801 [exp] 172 / 7e-48 AT1G03350 211 / 1e-62 BSD domain-containing protein (.1) Potri.015G050700 [exp] 122 / 4e-33 AT1G03350 116 / 1e-31 BSD domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03909 [flax] [poplar] BSD BSD domain
Representative CDS sequence Show only first row Show all	>Lus10029636 pacid=23152047 polypeptide=Lus10029636 locus=Lus10029636.g ID=Lus10029636.BGIv1.0 annot-version=v1.0 ATGGATTTCTTCAGATCAGTCTTCGCCGACGAACCAGACGCCCCTACCAAGTCCACGCCCGACTCCCCATCCTCTACAGATCAAGAACATCAAGAGCAAT CAATCTCCGATCCGGACACCGATTCTCCACCAAAGCAACAATCCTCAAAACCTAGCTCCGAAGCCAGCAGCATCGGCGGAGGCGGTGGTTGGAGTAGCTT CGGCGGCCTAATGAAAACACTAACCACCAAATCCGAATCCGTCATCGAGACCTACCGCCGCGATCTGAAAGAATTTAGCACCGGGTTGCGCAAGGAGATC GAGGTCGCTCAGGGATCGTTGGAGCACGTCGGCCAGGCCATCGACGAGATCGGGAGTTCCGTAATTAAGAACACCACGGAGATCATTTCGCACGGCAAGG AAGCATTGTTGGCTCTCGAGCAAGAAGAATCTGATTCCTCCGACAGCAACATGGAGAGAGGAGGAGGCAGCAGCACCAATAGCTTGAGGTACAGCCGATT CGACGCTCAGGTTAGGGTTATCCAGGGGGACACCAGCACTTACTGCGAGGAGCCAGATGATTTGGAGGATTTTGGTAAGTGGAAATCGTCTCAGTTTGTG ATTGAAGAGTGTAGGGATGAGATCACGAGTTTGCTGGAAGGGAATGGTGCTATGGATGTCATATATAGAAAAGTGGTTCCAGGAACTGTTGATGAAGAAA CGTTCTGGTCGAGATATTACTATAGGATTTATAAGCTCAAGCAAGCAGAGGCTTTGAGAGCTAATCTCGTGAAGCGAGCCATCTCTGCTGAGGAGGAGGA TTTGAGTTGGGATATTGATGATGAAGATGAGGAAGAAGGGGATGAATGGAAGGGCAAGGAGAATGAAGTCAAAGAGGAGGTGAAGGTTAGTGTAGAGGAG AATCCGAAGGTGGAGAGCAGAGATTTAATGGAAGTTGGGAAATTGGATGGAACCAGTGAGGTGGAGGAGAACCCTGTTGAGGATAAGAGAATGGCAGAAG GGAAGTCTGAAGAAACTGTGAATGCCAAAGAGGAACCTGCTGCTGCTACTGCAACAGTTGAGGAACCAAAAGTTGAGGAGAAAGCAAATGATGCTACTGC TACTGCTAGTGGTAGTGAATCTAAGGAGAAAGTAGACGAAAGCATCAAAGAAGCAACTGCAGCAGCAAAATTGGCTGAGAATTCAGGCTCAGAAGAGAAT GGTGGCAATGGGGGATCCTGTAAAGACAGTGATTACTCAGTAGTGTCGAGCCATCAGACGACTGGAGAGGAGGAAGATCTAGGATGGGACGAGATTGAAG ATCTAAGCAGCATCGACGTTAGTAAGAAAGAGGAGATGAGAGCGAGCCAGAGTGGGAGTGCTGCTGCAAACAAGGAGGAATTGAGGAGGAGACTGAGTGT TGCAGAGGAAGAGGAGGAGGATTTGAGTTGGGATATTGAAGATGATGATGAGCCGGTTAAAGCTTGA
AA sequence Show only first row Show all	>Lus10029636 pacid=23152047 polypeptide=Lus10029636 locus=Lus10029636.g ID=Lus10029636.BGIv1.0 annot-version=v1.0 MDFFRSVFADEPDAPTKSTPDSPSSTDQEHQEQSISDPDTDSPPKQQSSKPSSEASSIGGGGGWSSFGGLMKTLTTKSESVIETYRRDLKEFSTGLRKEI EVAQGSLEHVGQAIDEIGSSVIKNTTEIISHGKEALLALEQEESDSSDSNMERGGGSSTNSLRYSRFDAQVRVIQGDTSTYCEEPDDLEDFGKWKSSQFV IEECRDEITSLLEGNGAMDVIYRKVVPGTVDEETFWSRYYYRIYKLKQAEALRANLVKRAISAEEEDLSWDIDDEDEEEGDEWKGKENEVKEEVKVSVEE NPKVESRDLMEVGKLDGTSEVEENPVEDKRMAEGKSEETVNAKEEPAAATATVEEPKVEEKANDATATASGSESKEKVDESIKEATAAAKLAENSGSEEN GGNGGSCKDSDYSVVSSHQTTGEEEDLGWDEIEDLSSIDVSKKEEMRASQSGSAAANKEELRRRLSVAEEEEEDLSWDIEDDDEPVKA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03350			BSD domain-containing protein ...		Lus10029636 [exp]	0	1
AT1G65720			unknown protein		Lus10031363 [exp]	2.4	0.9225
AT5G17190			unknown protein		Lus10005110 [exp]	3.2	0.8977
AT5G58020			unknown protein		Lus10035833 [exp]	6.2	0.8898
AT5G39570			unknown protein		Lus10016220 [exp]	6.5	0.9081
AT1G11360			Adenine nucleotide alpha hydro...		Lus10037867 [exp]	6.6	0.9043
AT4G29680			Alkaline-phosphatase-like fami...		Lus10032681 [exp]	6.9	0.9080
AT1G79550		PGK	phosphoglycerate kinase (.1.2)		Lus10031167 [exp]	7.7	0.8969
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Lus10010623 [exp]	8.9	0.8781
AT1G05780			Vacuolar ATPase assembly integ...		Lus10033833 [exp]	9.2	0.8891
AT1G29790			S-adenosyl-L-methionine-depend...		Lus10015264 [exp]	9.8	0.8662

Compare expression of checked genes

Lus10029636 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.