Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02940 488 / 5e-168 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) AT2G48080 421 / 7e-144 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) AT1G14710 160 / 2e-42 hydroxyproline-rich glycoprotein family protein (.1.2) AT4G36090 131 / 6e-33 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1), oxidoreductase, 2OG-Fe(II) oxygenase family protein (.2), oxidoreductase, 2OG-Fe(II) oxygenase family protein (.3) AT2G17970 129 / 1e-32 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT1G48980 110 / 2e-26 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042669 [exp] 931 / 0 AT4G02940 498 / 5e-172 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10027990 [exp] 674 / 0 AT4G02940 535 / 0.0 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10008166 [exp] 671 / 0 AT4G02940 511 / 2e-177 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10028462 [exp] 120 / 6e-29 AT2G17970 542 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10041917 [exp] 120 / 7e-29 AT2G17970 549 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10028670 [exp] 85 / 2e-18 AT2G17970 249 / 5e-81 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G137700 [exp] 566 / 0 AT4G02940 542 / 0.0 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Potri.008G138900 [exp] 177 / 7e-48 AT1G14710 423 / 6e-140 hydroxyproline-rich glycoprotein family protein (.1.2) Potri.010G102100 [exp] 172 / 2e-46 AT1G14710 421 / 3e-139 hydroxyproline-rich glycoprotein family protein (.1.2) Potri.002G210732 [exp] 127 / 2e-34 AT4G02940 123 / 2e-33 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Potri.005G114800 [exp] 117 / 5e-28 AT2G17970 504 / 1e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Potri.007G012200 [exp] 107 / 2e-24 AT2G17970 458 / 2e-157 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10029637 pacid=23152159 polypeptide=Lus10029637 locus=Lus10029637.g ID=Lus10029637.BGIv1.0 annot-version=v1.0 ATGCCCGATCCAGCTCCACCAATCCAGTCTCCGCCGCCGACGACGATGATGATGACTACCTCCGATGCCGCCTTCGCCAAGGACGCAATCCTCGCGTGGT TCCGGGGAGAATTCGCCGCTGCAAATGCGATCATCGACGCATTGTGCGAACACCTGGCGGAACTCAGCTGCAAGGGAGGTTGCCGATCGGATTACGAGCC GGTTTTCTCTGCTATTCATAGGAGGCGGCTCAACTGGATCCCCGTCCTCCGGATGCAGAAGTACCACTCCGTCGCTGACGTCGCCGCAGAGGTCAGGCGC GTCACCGAGAGGAAAGTGCAGGAGAGGAAAGAAGACAATACTAAGGCCAAAGAGGAGGAGGAGAAGGAGGAGAAACAGGATGAGAATTGTGAAATGGTGG CGGAGGAGGTGGAGGTGGCGGACTATTCGCCGGACGGCAGTGATCATGGTACCGATTCAGGAGCATCTCAGTCACAGGAAGTGCAGCCAAATAGTAGTGA TGACACCACCACCATTGATATATGTTCCAACCACCAAGAGTGCGATCACCGCCCTAATCTATTCAACCTCACTAAAGGTTTCTCTGCCAAGGAACATGTG AATGTTGTCAAAGGGTTGAAGTTATTTGAACAGGTGTTCACTGATTCCGAGCTGTCCAAGTTGACTCACTTCGTCAATGAACTCAGACTTGCAGGGCAGA AAGGGGAACTCTCAGGTGATACTTTCATCCTGTTCAACAAACAGATGAAAGGGAACAAGAGAGAGCTGATTCAGTTTGGCGTCCCGATTTTCGAGCATAT TAAAGAAGATGCTAGTAACCAAACTTGCAACATAGAACCAATTCCAGCTCTTCTTGAAGGAGTCATCAATCACCTCATCAAGTGGCGTCTCGTACCAGAA TACAGAAGGCCAAATGGTTGCATCATCCATTTCTTTGATGAGGAGGAATTTTCGCAACCATTTCAGAAGCCACCCCATCTGGAGCAACCAGTAGCTACCC TTTTCCTTTCCGAATCAAGTATGGCATTCGGACGTAATCTTTCTGGCGACAACGAAGGCAATTACAGAGGCTCGCTGGTGCTGTCATTGAAACAAGGGTC ACTTCTAGTAATGAGAGGGAACAGCGCCGATATGGCAAGGCACGTAATGTGTCCTTCCCAAAACAAGAGGGTAAGCATAACATTCTTCCGAGTTCGTGAA GAACCTATCCAAACCCAGTCGCCACCAACCAGTCCAATGCACAGTGGCGCCATGACTGTCTGGCAGCCAGCGAGCCTGGTCAACAATGGCTATGGTGGAG TGGGAACAATCCCGAACTGGGGCCATTTAATTCGCAGCCCATTCATCATGGTGGCTGCACCACCTATGGCTCAGCCTCATTTGATGGTTACTCCGAAAAG AATAATGCCTCCTCTGGCCCAGAGCGGAGGAGGTACGGGAGTTTTCTTGCCCTGGACTCGAATGGGCAGCCGGAAAACTCCAAAGCACCTTCCACCCCGC GCCCAAAGGGGGAGATACTTGGCATTGCCTTCTGGTCGCCGCACTGTGGATCCTACCTCATCTGAGACGGCCATCACCCTAGAGAGAGGCGAAATCAACA TGAAAGTCTAA
AA sequence Show only first row Show all	>Lus10029637 pacid=23152159 polypeptide=Lus10029637 locus=Lus10029637.g ID=Lus10029637.BGIv1.0 annot-version=v1.0 MPDPAPPIQSPPPTTMMMTTSDAAFAKDAILAWFRGEFAAANAIIDALCEHLAELSCKGGCRSDYEPVFSAIHRRRLNWIPVLRMQKYHSVADVAAEVRR VTERKVQERKEDNTKAKEEEEKEEKQDENCEMVAEEVEVADYSPDGSDHGTDSGASQSQEVQPNSSDDTTTIDICSNHQECDHRPNLFNLTKGFSAKEHV NVVKGLKLFEQVFTDSELSKLTHFVNELRLAGQKGELSGDTFILFNKQMKGNKRELIQFGVPIFEHIKEDASNQTCNIEPIPALLEGVINHLIKWRLVPE YRRPNGCIIHFFDEEEFSQPFQKPPHLEQPVATLFLSESSMAFGRNLSGDNEGNYRGSLVLSLKQGSLLVMRGNSADMARHVMCPSQNKRVSITFFRVRE EPIQTQSPPTSPMHSGAMTVWQPASLVNNGYGGVGTIPNWGHLIRSPFIMVAAPPMAQPHLMVTPKRIMPPLAQSGGGTGVFLPWTRMGSRKTPKHLPPR AQRGRYLALPSGRRTVDPTSSETAITLERGEINMKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02940			oxidoreductase, 2OG-Fe(II) oxy...		Lus10029637 [exp]	0	1
AT3G29770		ATMES11	ARABIDOPSIS THALIANA METHYL ES...		Lus10030707 [exp]	1.0	0.7139
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10033896 [exp]	13.6	0.6061
AT4G02940			oxidoreductase, 2OG-Fe(II) oxy...		Lus10008166 [exp]	26.1	0.6003
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10001437 [exp]	37.1	0.5665
AT3G12570		FYD	FYD (.1.2.3.4)		Lus10040301 [exp]	42.0	0.5867
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041668 [exp]	50.1	0.5638
AT5G24810			ABC1 family protein (.1.2)		Lus10026970 [exp]	51.0	0.5795
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Lus10020236 [exp]	53.4	0.5669
AT1G17120		CAT8	cationic amino acid transporte...		Lus10005574 [exp]	74.6	0.5635
AT4G10310		ATHKT1, HKT1	high-affinity K+ transporter 1...		Lus10040598 [exp]	76.7	0.5565

Compare expression of checked genes

Lus10029637 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.