Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54790 440 / 4e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) AT3G05180 402 / 2e-139 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G56670 328 / 3e-110 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G09390 313 / 1e-104 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G26430 303 / 3e-100 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G62280 302 / 3e-100 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G67830 286 / 7e-94 ATFXG1 Arabidopsis thaliana alpha-fucosidase 1, alpha-fucosidase 1 (.1) AT5G14450 277 / 4e-90 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G27950 265 / 8e-86 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G01130 254 / 2e-81 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029639 [exp] 548 / 0 AT1G54790 421 / 4e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10029980 [exp] 453 / 3e-159 AT1G54790 578 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10029677 [exp] 351 / 8e-117 AT1G21780 538 / 0.0 BTB/POZ domain-containing protein (.1.2) Lus10008784 [exp] 291 / 9e-96 AT3G27950 391 / 2e-135 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10001522 [exp] 283 / 1e-92 AT1G09390 459 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10032094 [exp] 280 / 5e-91 AT5G14450 578 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10014592 [exp] 278 / 2e-90 AT5G14450 573 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10006224 [exp] 281 / 1e-87 AT3G26430 342 / 5e-111 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10031438 [exp] 258 / 3e-81 AT1G09390 406 / 4e-139 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G216000 [exp] 494 / 2e-175 AT1G54790 474 / 1e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Potri.005G038800 [exp] 452 / 7e-159 AT1G54790 595 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Potri.013G026300 [exp] 451 / 3e-158 AT1G54790 605 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Potri.005G006500 [exp] 318 / 1e-106 AT1G09390 506 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G177700 [exp] 309 / 1e-102 AT3G26430 407 / 2e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G074400 [exp] 309 / 1e-102 AT3G26430 388 / 8e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G191100 [exp] 307 / 3e-102 AT1G09390 400 / 5e-139 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G185500 [exp] 306 / 3e-101 AT3G26430 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G047900 [exp] 301 / 2e-99 AT3G26430 504 / 1e-179 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G083700 [exp] 295 / 3e-97 AT3G26430 417 / 3e-145 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10029638 pacid=23152032 polypeptide=Lus10029638 locus=Lus10029638.g ID=Lus10029638.BGIv1.0 annot-version=v1.0 ATGGCCACTTATTATCACACAATGATCACTTGTTCCTTTCTCTTGCTCATCATCTCATTTTCATTACTGCTCTCTGCTTACGGAAGCGGTTTCAGTGGGT ACCCTACAGTATTCAACTTCGGTGATTCCAACTCCGACACCGGTGGCTTGGTTGCCGGCGTTGCTTTCCCAATTGGCCCTCCCAATGGACAAACTTACTT CCACAAGCCTTCCGGCCGTTTCTGCGACGGGCGCCTCATCATTGATTTCCTTATGAATGCGGTGGATTTTCCATTTCTGAGTCCATATTTGGAATCAGTA GGCGCACCAAGCTTCAAAACAGGGACCAATTTCGCCACAGGCGGGGCAACTATAGTACCGGCAAATGCAGCTTCCAGGAATCCATTCTCGTTCGGAATTC AGGTGGCTCAGTTTTCCAGGTTCAAGGCTCGAGTCCTTGAGTTGCTTGCTACAGGTAAGAAGGAGCTGAGGAAGTATCTCCCGGAAGAGGACTATTTCCA TGATGGGCTATACATGTTTGACGTGGGTCAGAATGATCTATACGTCGCCTTCTTTTCCAAAACAGAGGACCAAGTCATAGCTTCAATTCCAGCAATTCTC TCTGAGTTCGAGAATGGAATCCAGAAATTATACAACCTGGGAGCCCGGAACTTTTGGATCCACAACACAGGCCCACTGGGCTGCCTAGCCAGAGTCATAG CTGCAGCAAACACCTCCGCCGGCGACAAATCTGACGGCGTCGATCAATTCGGCTGCCTCGCTTCAAGAAACAGAGCCTCCAAATCATTCAACTCCCAACT CAATCAGCTCTGCGCCAAGCTACGCAGCCAATACCCAGACGCCAAGCTCACATATGTAGACGTCTACTCCGTCAAACTCAATCTCATCGCAAACTACTCC CGTTACGGATTCAAGGAGCCGTTGGCGGCTTGCTGCGGCTACGGCGGGCCTCCCCTGAATTTCGGCAGCAGGGTGGACTGTGGAGTGACCAAGAACATCA ACGGGACAATTGTGAAGGCGAATCCTTGTAACGACACTTCACAGTATGTGAATTGGGATGGAATTCATTACACCGAATCTGCCAACCGGTTTGTTGCCCA GCAATTGCTGTCGGGAAATTTTACCGACGACGACTCACCGGCGGCAGCTGTATCGCATAAACCCAGTTTGTTACGCTCGTCCAAACTGATGCTCTTCTGA
AA sequence Show only first row Show all	>Lus10029638 pacid=23152032 polypeptide=Lus10029638 locus=Lus10029638.g ID=Lus10029638.BGIv1.0 annot-version=v1.0 MATYYHTMITCSFLLLIISFSLLLSAYGSGFSGYPTVFNFGDSNSDTGGLVAGVAFPIGPPNGQTYFHKPSGRFCDGRLIIDFLMNAVDFPFLSPYLESV GAPSFKTGTNFATGGATIVPANAASRNPFSFGIQVAQFSRFKARVLELLATGKKELRKYLPEEDYFHDGLYMFDVGQNDLYVAFFSKTEDQVIASIPAIL SEFENGIQKLYNLGARNFWIHNTGPLGCLARVIAAANTSAGDKSDGVDQFGCLASRNRASKSFNSQLNQLCAKLRSQYPDAKLTYVDVYSVKLNLIANYS RYGFKEPLAACCGYGGPPLNFGSRVDCGVTKNINGTIVKANPCNDTSQYVNWDGIHYTESANRFVAQQLLSGNFTDDDSPAAAVSHKPSLLRSSKLMLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Lus10029638 [exp]	0	1
AT1G78060			Glycosyl hydrolase family prot...		Lus10019099 [exp]	3.0	0.9665
AT2G04305			Magnesium transporter CorA-lik...		Lus10010751 [exp]	3.0	0.9760
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10032593 [exp]	3.2	0.9835
AT2G03200			Eukaryotic aspartyl protease f...		Lus10025702 [exp]	4.0	0.9827
AT5G61350			Protein kinase superfamily pro...		Lus10000562 [exp]	4.9	0.9727
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10015576 [exp]	6.3	0.9754
AT1G58070			unknown protein		Lus10019953 [exp]	6.7	0.9752
AT5G17820			Peroxidase superfamily protein...		Lus10013631 [exp]	10.0	0.9529
AT2G03550			alpha/beta-Hydrolases superfam...		Lus10019885 [exp]	10.6	0.9721
AT2G03200			Eukaryotic aspartyl protease f...		Lus10035961 [exp]	12.0	0.9642

Compare expression of checked genes

Lus10029638 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.