Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54790 417 / 1e-145 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) AT3G05180 389 / 2e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G56670 315 / 2e-105 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G09390 300 / 1e-99 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G62280 298 / 4e-99 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G26430 296 / 5e-98 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G67830 281 / 1e-92 ATFXG1 Arabidopsis thaliana alpha-fucosidase 1, alpha-fucosidase 1 (.1) AT5G14450 279 / 3e-91 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G01130 262 / 1e-84 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G27950 259 / 7e-84 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029638 [exp] 548 / 0 AT1G54790 443 / 2e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10029980 [exp] 445 / 2e-156 AT1G54790 578 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10032094 [exp] 281 / 7e-92 AT5G14450 578 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10014592 [exp] 280 / 2e-91 AT5G14450 573 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10001522 [exp] 277 / 1e-90 AT1G09390 459 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10008784 [exp] 273 / 7e-89 AT3G27950 391 / 2e-135 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10006224 [exp] 278 / 7e-87 AT3G26430 342 / 5e-111 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10012644 [exp] 253 / 2e-81 AT4G01130 494 / 1e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10031438 [exp] 251 / 6e-79 AT1G09390 406 / 4e-139 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G216000 [exp] 470 / 2e-166 AT1G54790 474 / 1e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Potri.005G038800 [exp] 444 / 4e-156 AT1G54790 595 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Potri.013G026300 [exp] 441 / 6e-155 AT1G54790 605 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Potri.005G006500 [exp] 317 / 1e-106 AT1G09390 506 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G177700 [exp] 303 / 1e-100 AT3G26430 407 / 2e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G074400 [exp] 293 / 8e-97 AT3G26430 388 / 8e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G342600 [exp] 291 / 3e-96 AT5G14450 595 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G047900 [exp] 290 / 2e-95 AT3G26430 504 / 1e-179 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G083700 [exp] 286 / 5e-94 AT3G26430 417 / 3e-145 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G185500 [exp] 286 / 6e-94 AT3G26430 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10029639 pacid=23151987 polypeptide=Lus10029639 locus=Lus10029639.g ID=Lus10029639.BGIv1.0 annot-version=v1.0 ATGACTTCTAATTCTCTTCTATCGTTGCTACTCTTCTCTTCTTATTTTCTGTCTGCCAAAGGGAATTACCCAGCGGTATTCAACTTCGGTGATTCTAACT CCGACACTGGTGGATCAGCTGCCGGCGTTGCTTTCCCCGTCGTTCCTCCCTACGGCCAAACCTACTTCCACAAGCCTTCCGGCCGTTTCTCCGACGGCCG CCTCATTATTGATTTCCTCATGGGTGCGATGGATTTGCCATTTTTGAGTCCATATTTGGACTCAGTGGGTGCTCCAAGCTTCAGAAAAGGGACCAATTTC GCCACAGCTGGGGCCACTATACTTGCAGTGAATGCGAATACCATATTCCCGTTTTCATTCGGTATTCAAGTGGCTCAGTTCGCTAGATTCAACGCTAAAG TCCTCCAGCTACTTGCTACAAGTAAGAAGCTACGAAAGTATCTCCCGAAAGAGGAATCTTTTCAGGATGGACTCTATATGTTTGATGTGGGACAAAATGA TATCTATGCGGCCTTCTTTAACAAAACAGAGGAACAAGTCACAGCTTCCATTCCAGGAATCTTGTATGAGTTCGAGTTAGGAATTCAGAAACTATACGAC TTGGGGGCCCGGAATTTCTGGATCCACAACACAGGCCCACTGGGCTGCCTGGCCAGACTCATAACAGCAAGCAACGCAGGCGGCAACAAAACCCAACCGG ACGACGTGGATCAATTCGGCTGTCTGGCTTCAAGAAACAGAGCAGCAGTCGCCTTCAATTCCCAGCTTCATCAGCTATGCACCACCCTACGAGCCCGACT CACCGACGCCAAGCTTACATACGTCGACGTCTACTCCGTCAAACTCGATCTGATTGCAAACTACTCCCGTTACGGGTTCAAGGAGCCGTTAGCAGCTTGC TGTGGCTACGGTGGGCCACCGTTAAATTTTGACAGTAGGGTCCCTTGTGGAGCGACCGTTAACATCAGCGGGACAACGGTGACGGCGTATCCTTGTAACG ACGTTTCTGAGTATGTGAATTGGGACGGGACTCATTACACTGAAGCCGCTAATCGGTTTGTTGCTGAACAATTGCTGTACGGAAATTTTAGCGTGACTGT TCCAGGCTAA
AA sequence Show only first row Show all	>Lus10029639 pacid=23151987 polypeptide=Lus10029639 locus=Lus10029639.g ID=Lus10029639.BGIv1.0 annot-version=v1.0 MTSNSLLSLLLFSSYFLSAKGNYPAVFNFGDSNSDTGGSAAGVAFPVVPPYGQTYFHKPSGRFSDGRLIIDFLMGAMDLPFLSPYLDSVGAPSFRKGTNF ATAGATILAVNANTIFPFSFGIQVAQFARFNAKVLQLLATSKKLRKYLPKEESFQDGLYMFDVGQNDIYAAFFNKTEEQVTASIPGILYEFELGIQKLYD LGARNFWIHNTGPLGCLARLITASNAGGNKTQPDDVDQFGCLASRNRAAVAFNSQLHQLCTTLRARLTDAKLTYVDVYSVKLDLIANYSRYGFKEPLAAC CGYGGPPLNFDSRVPCGATVNISGTTVTAYPCNDVSEYVNWDGTHYTEAANRFVAEQLLYGNFSVTVPG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Lus10029639 [exp]	0	1
AT5G17820			Peroxidase superfamily protein...		Lus10018375 [exp]	1.0	0.9462
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10006839 [exp]	3.9	0.9421
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10036177 [exp]	7.2	0.9428
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Lus10016064 [exp]	8.8	0.8414
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10015634 [exp]	9.6	0.9171
AT3G56970	bHLH	ORG2, bHLH038	OBP3-RESPONSIVE GENE 3, basic ...		Lus10027300 [exp]	13.2	0.7980
AT5G57880		MPS1, ATPRD2	ARABIDOPSIS THALIANA PUTATIVE ...		Lus10010784 [exp]	16.7	0.8351
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10035932 [exp]	21.5	0.9100
AT5G62130			Per1-like family protein (.1.2...		Lus10031658 [exp]	21.6	0.8883
AT1G06990			GDSL-like Lipase/Acylhydrolase...		Lus10026406 [exp]	21.9	0.7773

Compare expression of checked genes

Lus10029639 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.