Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02920 205 / 1e-61 unknown protein AT1G03340 134 / 2e-35 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042685 [exp] 662 / 0 AT4G02920 233 / 7e-73 unknown protein Lus10027996 [exp] 365 / 5e-124 AT4G02920 254 / 4e-81 unknown protein Lus10008158 [exp] 355 / 2e-120 AT4G02920 248 / 1e-78 unknown protein Lus10008160 [exp] 297 / 3e-98 AT4G02920 209 / 3e-64 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G138200 [exp] 307 / 2e-101 AT4G02920 276 / 4e-89 unknown protein Potri.002G215800 [exp] 289 / 4e-94 AT4G02920 290 / 2e-94 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029640 pacid=23151986 polypeptide=Lus10029640 locus=Lus10029640.g ID=Lus10029640.BGIv1.0 annot-version=v1.0 ATGGAAAAGCTTTGTTTGATGGCTTCACATGGCTACCCTCCTGGTCCTGGGCTCTTCCTTCATCAAGAGCACACCAAGGTTGTCAAGGATTGTCAATCTT TTCTACCTAATATGGTGTCAGGAAAAGAGATGATGTGGTCGAACTCTATTCATCTGAATCCTCCTCATCAGCGTGAGGAAATAAGGAGTCCTATGATTGG AGTTGAACTGGCCAACCGCTTAGCCAAGATGGATTCTTCAACCTTTGGAGAGCCTTTGCTTGTTAATTTGACAGATGAACAATACACTAGCCACAACAGT ACAATGGAGTTCCTCAAATCTCGTTGGAGCGAGTTTGAAACAGGAGGATTATTTTCTTCTGAAGCTTCTGATCTGATGGGACTTCACACATTGCAATTCC CAGCGGACCTGGAAGCATACAGCCAGGAAATTACAACGAATGGCGAATTTGACGACTACATGAACCCTTTAATGGACTTTGTTGGAGATATGGTTCGCAG TTCGATAATCACAATTCATCCCGATGGTCGAATTGTGTTGACTGCCACTGGTGCAGAGATTAAGGACATCGTCCCCATTGTTGCTGAGTTCTACCTGGCA AATAGTTCCAGAACTTGGAGAAAACATTCAGCGGTCATCCCCCATTTTACCTGGTTTGATACGTATGGATCAGAATTTGCTTCATTGAATATCCAAAATA TGACTGTTGCGCCTCTGGATAGTCCCGAGAAAGTAAAGGTGAAGCGATCAGGCAAGAGGAAAATTAGCAGTAGGAGAGGGAGCACAGTTCGCGATCTTCA CAAGCGGAACTACTTCCATGCATGTGAGAGCCTTCTATCCTTGATGATGAACAAGAAACACAATGGCAGAGCTGCTATGCTGTCACTGAAGAAATCCGGC CCCGAACTTCCGGAGTTGCTGACCCAGTTCTCTGCTGGCATTGCTGGCATCGGCATTGCCATTCTATTCGCCGTTGCATGCAAGGTCGCTTCTGGTACGG TACCCTTGTGCACGTCCAAACTCCTAAGCACAGGGTTAGGTGCTATAATGGTCTGGCTATCTTGGTCAGTGAATAAACTACGAGACACGATAGCTAACGT CAGCAAGAATGCAAGCAAGAGCCTCAACGATGAAGCAGTGATGATTAGCACTGTTGACAAAAGTTTGAAGGATGTGTACTTCAGAGCTGCAACATTGCTC GCGGTTGCTGTTCTGAGAGTTGCATGA
AA sequence Show only first row Show all	>Lus10029640 pacid=23151986 polypeptide=Lus10029640 locus=Lus10029640.g ID=Lus10029640.BGIv1.0 annot-version=v1.0 MEKLCLMASHGYPPGPGLFLHQEHTKVVKDCQSFLPNMVSGKEMMWSNSIHLNPPHQREEIRSPMIGVELANRLAKMDSSTFGEPLLVNLTDEQYTSHNS TMEFLKSRWSEFETGGLFSSEASDLMGLHTLQFPADLEAYSQEITTNGEFDDYMNPLMDFVGDMVRSSIITIHPDGRIVLTATGAEIKDIVPIVAEFYLA NSSRTWRKHSAVIPHFTWFDTYGSEFASLNIQNMTVAPLDSPEKVKVKRSGKRKISSRRGSTVRDLHKRNYFHACESLLSLMMNKKHNGRAAMLSLKKSG PELPELLTQFSAGIAGIGIAILFAVACKVASGTVPLCTSKLLSTGLGAIMVWLSWSVNKLRDTIANVSKNASKSLNDEAVMISTVDKSLKDVYFRAATLL AVAVLRVA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02920			unknown protein		Lus10029640 [exp]	0	1
AT1G02800		ATCEL2	cellulase 2 (.1)		Lus10017338 [exp]	1.0	0.9698
AT4G39970			Haloacid dehalogenase-like hyd...		Lus10000633 [exp]	1.4	0.9577
AT1G07010		AtSLP1	Shewenella-like protein phosph...		Lus10031284 [exp]	2.8	0.9566
AT2G41040			S-adenosyl-L-methionine-depend...		Lus10008815 [exp]	3.7	0.9467
AT2G30950		FTSH2, VAR2	VARIEGATED 2, FtsH extracellul...		Lus10001420 [exp]	3.9	0.9575
AT2G30950		FTSH2, VAR2	VARIEGATED 2, FtsH extracellul...		Lus10001054 [exp]	5.5	0.9556
AT1G64680			unknown protein		Lus10001667 [exp]	5.5	0.9516
AT4G01935			unknown protein		Lus10010062 [exp]	6.9	0.9292
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10010012 [exp]	7.1	0.9060
AT4G02920			unknown protein		Lus10042685 [exp]	7.5	0.9255

Compare expression of checked genes

Lus10029640 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.