Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48100 371 / 4e-128 C2H2ZnF Exonuclease family protein (.1.2.3.4) AT3G27970 337 / 1e-114 Exonuclease family protein (.1) AT5G40310 324 / 2e-109 C2H2ZnF Exonuclease family protein (.1) AT3G15080 92 / 3e-21 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G50100 74 / 2e-14 SDN1 small RNA degrading nuclease 1 (.1) AT5G05540 71 / 2e-13 SDN2 small RNA degrading nuclease 2 (.1.2) AT5G67240 62 / 3e-10 SDN3 small RNA degrading nuclease 3 (.1.2) AT5G25800 55 / 4e-08 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G50090 53 / 1e-07 Exonuclease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042687 [exp] 636 / 0 AT2G48100 362 / 2e-124 Exonuclease family protein (.1.2.3.4) Lus10022230 [exp] 343 / 8e-117 AT3G27970 585 / 0.0 Exonuclease family protein (.1) Lus10008787 [exp] 340 / 1e-115 AT3G27970 583 / 0.0 Exonuclease family protein (.1) Lus10011026 [exp] 97 / 6e-23 AT3G15080 283 / 2e-96 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10000997 [exp] 97 / 7e-23 AT3G15080 325 / 4e-112 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10019321 [exp] 68 / 3e-12 AT5G67240 378 / 1e-122 small RNA degrading nuclease 3 (.1.2) Lus10011504 [exp] 68 / 4e-12 AT5G67240 370 / 5e-119 small RNA degrading nuclease 3 (.1.2) Lus10011505 [exp] 62 / 2e-10 AT5G67240 358 / 1e-116 small RNA degrading nuclease 3 (.1.2) Lus10018935 [exp] 50 / 2e-06 AT5G25800 635 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G215700 [exp] 442 / 4e-156 AT2G48100 374 / 3e-129 Exonuclease family protein (.1.2.3.4) Potri.017G073300 [exp] 345 / 1e-117 AT3G27970 577 / 0.0 Exonuclease family protein (.1) Potri.001G373500 [exp] 95 / 3e-22 AT3G15080 346 / 1e-120 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.007G048000 [exp] 67 / 5e-12 AT5G67240 402 / 4e-132 small RNA degrading nuclease 3 (.1.2) Potri.005G186600 [exp] 54 / 9e-08 AT5G25800 752 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF00929 [flax] [poplar] RNase_T Exonuclease
Representative CDS sequence Show only first row Show all	>Lus10029642 pacid=23152081 polypeptide=Lus10029642 locus=Lus10029642.g ID=Lus10029642.BGIv1.0 annot-version=v1.0 ATGGATTGTGAGCACGACCCACCTTCCAAAACCCCAACCAAGAGACACAGATGTTCTGCATGCTTCAAGCAATTTAAGAGAAAGGACCATCTAGTTCAAC ACATGAAGATATCATACCACTCTCACCATCAGCCAAAATGTGGCATTTGTCTAAAGCATTGCAAATCCTTTCAGTCTTTGAGAGAGCATCTTGCAGGTTC ATTGCCAAGATCATCTTGCTCAAAGAGTTTCGCAGACCGAGGTTGTGATCTTTGCTTGAATGTTTTTGATGATGCCAATGATCTTAGCAACCATAGAGAA ACATGCCTCTTATCTGCACCTTCTCCCTTGGCAACTAAGATTTCGTCAGCAGATGCTTCAATGTATGGCAGTGGGTCGGCTGGGGGAAAATGTGCGGGTG GAAATAAGAAAGCCATTGCGATCGATTGTGAAATGGTCAGTGGTGGTGATGATGGAACGATAGACTTATGTGGTCAGGTATGCCTTGTTGATGAAGATGA AAATATTGTTTTCCACACATATGTTCAGCCTCAAGCTCCCGTCACTGACTATAGATTTGAAGTGACTGGACTAACTGAAGAACACCTTAAAGATGGGATG CCATTCCAGGAAGTCAAAGATAGAATTTTGGACATTTTGTGCAATGGAGAGTCAATTGGAAAAGCAAGATCAGATGGTGGAAAAGCTAGGCTGCTTGTGG GTCACAGCTTGGAGTTTGATCTGGATTGCCTCAGAATTAGATATCCTCCTAATTTGTTGAGGGACACTGCGAAATACCGTCCACTGTTGAAAACGAACCT GGTTAGCTACTCACTCAAGTATCTCACCAAGACTTACTTAGGGTACGAGATTCAGAAAGAGAAGCACAACGCTTACGAAGATTGCCTCTCCAACATGCGA CTGTACAAAAGAATACGTAATCATCATCATCATCATCGTCATAATAGTGAGGTAGAACAACAATGCAAAGGTATTCTGAAAAAGAGAGATGGATATGAGT CTTGGAAGCTGAGGGAACTGGAGGCTATGTCACCAGATGAGCTGTACCAAATATCAACCTCAAACTACAGGTGTTGGTGTCTGGATTTGAGGCAACGCCA GCAGTAG
AA sequence Show only first row Show all	>Lus10029642 pacid=23152081 polypeptide=Lus10029642 locus=Lus10029642.g ID=Lus10029642.BGIv1.0 annot-version=v1.0 MDCEHDPPSKTPTKRHRCSACFKQFKRKDHLVQHMKISYHSHHQPKCGICLKHCKSFQSLREHLAGSLPRSSCSKSFADRGCDLCLNVFDDANDLSNHRE TCLLSAPSPLATKISSADASMYGSGSAGGKCAGGNKKAIAIDCEMVSGGDDGTIDLCGQVCLVDEDENIVFHTYVQPQAPVTDYRFEVTGLTEEHLKDGM PFQEVKDRILDILCNGESIGKARSDGGKARLLVGHSLEFDLDCLRIRYPPNLLRDTAKYRPLLKTNLVSYSLKYLTKTYLGYEIQKEKHNAYEDCLSNMR LYKRIRNHHHHHRHNSEVEQQCKGILKKRDGYESWKLRELEAMSPDELYQISTSNYRCWCLDLRQRQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G48100	C2H2ZnF		Exonuclease family protein (.1...		Lus10029642 [exp]	0	1
AT5G04250			Cysteine proteinases superfami...		Lus10037388 [exp]	10.2	0.7804
AT5G65640	bHLH	bHLH093	beta HLH protein 93 (.1.2)		Lus10002160 [exp]	41.8	0.7169
AT2G21240	BBR_BPC	BPC4, BBR/BPC4,...	basic pentacysteine 4 (.1.2)		Lus10042056 [exp]	47.3	0.6882
AT3G01410			Polynucleotidyl transferase, r...		Lus10032166 [exp]	70.2	0.6547
AT5G16950			unknown protein		Lus10026852 [exp]	213.6	0.6418
AT1G80530			Major facilitator superfamily ...		Lus10030111 [exp]	253.3	0.6424

Compare expression of checked genes

Lus10029642 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.