Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29320 809 / 0 PHS1 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) AT3G46970 493 / 7e-165 ATPHS2, PHS2 Arabidopsis thaliana alpha-glucan phosphorylase 2, alpha-glucan phosphorylase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042688 [exp] 1058 / 0 AT3G29320 1422 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Lus10037093 [exp] 763 / 0 AT3G29320 1378 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Lus10036892 [exp] 547 / 0 AT3G29320 1108 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Lus10001200 [exp] 468 / 4e-149 AT3G46970 1377 / 0.0 Arabidopsis thaliana alpha-glucan phosphorylase 2, alpha-glucan phosphorylase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G160200 [exp] 812 / 0 AT3G29320 1397 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Potri.004G123600 [exp] 717 / 0 AT3G29320 727 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Potri.009G041800 [exp] 507 / 5e-170 AT3G46970 1445 / 0.0 Arabidopsis thaliana alpha-glucan phosphorylase 2, alpha-glucan phosphorylase 2 (.1) Potri.004G048600 [exp] 355 / 3e-110 AT3G46970 842 / 0.0 Arabidopsis thaliana alpha-glucan phosphorylase 2, alpha-glucan phosphorylase 2 (.1) Potri.008G093901 [exp] 125 / 5e-34 AT3G29320 131 / 8e-37 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00343 [flax] [poplar] Phosphorylase Carbohydrate phosphorylase
Representative CDS sequence Show only first row Show all	>Lus10029643 pacid=23151977 polypeptide=Lus10029643 locus=Lus10029643.g ID=Lus10029643.BGIv1.0 annot-version=v1.0 ATGGTGATAACGACGGCGAGGGCTACATCTTCAGCGCCTCATCCGATTTCAGTTTCTAAATTAATCGATTTCCGTTCAGCGAGCGCCAGTTCGAAGTCGA GATCGAAGTTTTTCCTCACTCGCGCCTTCAACTCTCGCCCATTCCGCAGGTCCTTCTTCGTCAGCAACGTCTCGAGCGAGCATTCTCGGCGCTTCAATCT TTCGGCTGCCGTCCAACAAGAATCCTCGGAGAATCGACTTCCTCTCTCAGAAGATGCTTCATGTATCGCATTTAGTATCAAATACAATGCAGAATTCGTA CCATCATTTTCCCCTGGGCAGTTGGAACTTCCAAAAGCCTATTTGGCAACAGCACAAATTGTTCGGGAATCTCTTATAAAAAACTGGAATGCGACATACG ACCTCTATGAGAGGCTGAATGTAAAACAGGCTTACTATTTGTCGATGGAATTTTTGCAGGGTAGAGCGCTGTTGAATGCCATTGGTAATTTAGAGCTGAC TGGTCCTTATGCAGAGGCTTTGTCAAAGCTCGGACACAACTTAGAAAATGTGGCTTCCCAGGAGCCGGATGCTGCACTTGGAAATGGAGGTCTTGGGCGA CTGGCTTCCTGCTTTTTGGATTCTCTAGCAACTTTAGACTATCCAGCATGGGGCTATGGACTAAGGTACAAGTATGGATTGTTCAAACAACTGATTACAA AAGATGGTCAAGAAGAAGTGGCTGAAAATTGGCTTGAGATGGGAAATCCTTGGGAAATAGTGAGGAACGATGTCATATATCCCGTGAAGTTTTATGGCAA GGTGGATTCCGATGCAGATGGTAAAAGACACTGGATTGGTGGAGAAGACATAAAGGCTGTTGCCCATGATGTCCCAATACCAGGATATAAGACAAGAACT ACAATTAACCTACGACTTTGGTCAACTAAAGCCTCATCAAATGATTTTGATTTGGATGCTTTTAACGATGGAGACCACACAAAAGCATACAAGGCCCTAG CAGATGCTGAGAAGATTTGCCATGTTCTTTACCCCGGAGATGCCTCGGAGGAGGGGAAGATTCTCCGATTAAAGCAACAATATACCTTGTGTTCTGCTTC TCTCCAAGATATTATTGCACGGTTTGAGAGTAGATCAGGCTCTAATATTAACTGGGGAAACTTTCCTGAGAAAGTAGCAGTTCAGATGAACGATACTCAT CCAACGCTCTGCATCCCTGAACTGATGCGAATTTTGATGGACTTGAAAGGTTTAAACTGGAATGATGCCTGGAACATCACCAAGAGAACTGTGGCGTATA CAAACCATACAGTTCTACCAGAAGCCTTGGAGAAGTGGAGTTTAGAGCTTATGCAGAAACTGCTACCTCGACATGTTGAGATCATAAAAACTATTGATGA ACAGCTTATAAGCGAGATTGTTTCGGAGTATGGTAAAGAAGACAAAGAAATGCTGGATAAGAAACTAAAAGAAATGAGAGTGTTGGAAAATGTTGATCTG CCCGAGTCCTTTGCTGATTTAATTGTAAAACCTCAGGAAACCTCTGTTGATGTTTCCATTATAAAACTGAAAGAACCTCCTACAGAAACTGAATCAGTAT ATGTAAGTGATGAATCAGAGGATGGTTGCTCTGAGGAGGAAGAGGAGGAGAAGGTTGTGGCACCACCACCTCCGAAAATGGTTCGCATGGCTAATCTTTG TGTTGTCGGTGGTCATGCTGTAAATGGAGTTGCTGAAATACACAGTGAAATCGTGAAGGACGAAGTCTTTAAGTCTTTTTACAAGTTGTGGCCTAAGAAA TTCCAAAACAAGACGAATGGGGTTACACCAAGAAGGTGGATCCGTTTCTGCAATCTTGCATTGAGCAATATTATTACTGAGTGGACTGGCTCTGAAGACT GGGTGTTGAACACTGAAAGACTAGCAGAATTAAGGAAGGTTCTGCACCATTAG
AA sequence Show only first row Show all	>Lus10029643 pacid=23151977 polypeptide=Lus10029643 locus=Lus10029643.g ID=Lus10029643.BGIv1.0 annot-version=v1.0 MVITTARATSSAPHPISVSKLIDFRSASASSKSRSKFFLTRAFNSRPFRRSFFVSNVSSEHSRRFNLSAAVQQESSENRLPLSEDASCIAFSIKYNAEFV PSFSPGQLELPKAYLATAQIVRESLIKNWNATYDLYERLNVKQAYYLSMEFLQGRALLNAIGNLELTGPYAEALSKLGHNLENVASQEPDAALGNGGLGR LASCFLDSLATLDYPAWGYGLRYKYGLFKQLITKDGQEEVAENWLEMGNPWEIVRNDVIYPVKFYGKVDSDADGKRHWIGGEDIKAVAHDVPIPGYKTRT TINLRLWSTKASSNDFDLDAFNDGDHTKAYKALADAEKICHVLYPGDASEEGKILRLKQQYTLCSASLQDIIARFESRSGSNINWGNFPEKVAVQMNDTH PTLCIPELMRILMDLKGLNWNDAWNITKRTVAYTNHTVLPEALEKWSLELMQKLLPRHVEIIKTIDEQLISEIVSEYGKEDKEMLDKKLKEMRVLENVDL PESFADLIVKPQETSVDVSIIKLKEPPTETESVYVSDESEDGCSEEEEEEKVVAPPPPKMVRMANLCVVGGHAVNGVAEIHSEIVKDEVFKSFYKLWPKK FQNKTNGVTPRRWIRFCNLALSNIITEWTGSEDWVLNTERLAELRKVLHH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Lus10029643 [exp]	0	1
AT5G28850			Calcium-binding EF-hand family...		Lus10032772 [exp]	4.5	0.8952
AT5G19520		ATMSL9, MSL9	mechanosensitive channel of sm...		Lus10011952 [exp]	4.9	0.8866
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Lus10034304 [exp]	8.7	0.9084
AT3G19820		CBB1, EVE1, DW1...	ENHANCED VERY-LOW-FLUENCE RESP...		Lus10017413 [exp]	10.7	0.8922
AT3G44330			unknown protein		Lus10013307 [exp]	11.0	0.8815
AT3G20630		PER1, ATUBP14, ...	TITAN6, phosphate deficiency r...		Lus10038564 [exp]	13.4	0.8800
AT5G11390		WIT1	WPP domain-interacting protein...		Lus10005101 [exp]	13.4	0.8507
AT1G77680			Ribonuclease II/R family prote...		Lus10028065 [exp]	14.2	0.8418
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10003545 [exp]	14.4	0.8692
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10004937 [exp]	15.4	0.8908

Compare expression of checked genes

Lus10029643 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.