Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29320 538 / 0 PHS1 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) AT3G46970 424 / 1e-143 ATPHS2, PHS2 Arabidopsis thaliana alpha-glucan phosphorylase 2, alpha-glucan phosphorylase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042688 [exp] 598 / 0 AT3G29320 1422 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Lus10037093 [exp] 528 / 0 AT3G29320 1378 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Lus10036892 [exp] 523 / 0 AT3G29320 1108 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Lus10001200 [exp] 431 / 1e-140 AT3G46970 1377 / 0.0 Arabidopsis thaliana alpha-glucan phosphorylase 2, alpha-glucan phosphorylase 2 (.1) Lus10007546 [exp] 54 / 4e-08 ND 63 / 1e-10
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G123600 [exp] 548 / 0 AT3G29320 727 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Potri.010G160200 [exp] 525 / 0 AT3G29320 1397 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Potri.009G041800 [exp] 433 / 6e-147 AT3G46970 1445 / 0.0 Arabidopsis thaliana alpha-glucan phosphorylase 2, alpha-glucan phosphorylase 2 (.1) Potri.004G048600 [exp] 303 / 1e-95 AT3G46970 842 / 0.0 Arabidopsis thaliana alpha-glucan phosphorylase 2, alpha-glucan phosphorylase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00343 [flax] [poplar] Phosphorylase Carbohydrate phosphorylase
Representative CDS sequence Show only first row Show all	>Lus10029644 pacid=23151989 polypeptide=Lus10029644 locus=Lus10029644.g ID=Lus10029644.BGIv1.0 annot-version=v1.0 ATGAAGGTTGTCTCATTCCTCAAAGAAAAGACTGGGTACACTGTGAGCCCTGACGCTATGTTTGATATCCAGGTGAAACGCATTCATGAGTACAAGCGAC AGTTGCTGAATATTTTAGGCATTGTTTACCGCTACAAGAAGATGAAAGAAAGTACTGTAGAAGAAAGGAAAAACATGTATGCTCCGCGAGTATGTATATT CGGGGGGAAAGCGTTTGCTACATATGTTCAAGCAAAGAGAATTGTGAAGTTCATAACAGATGTTGGTGCTACCATTAATCACGACCCTGAGATTGGTGAC TTGTTGAAGGTGATTTTCGTCCCTGATTACAATGTCAGTGTTGCTGAATTGCTTATTCCAGCGAGTGAGCTGTCACAACACATTAGTACTGCTGGTATGG AAGCAAGTGGAACCAGCAATATGAAGTTCGCAATGAATGGATGTGTTTTAATAGGGACTTTAGATGGGGCTAATGTAGAAATCAGACAAGAGGTTGGAGA AGACAATTTCTTCCTCTTTGGTGCTCCAGCAGATGAGATTGCAGGATTGAGGAAGGAAAGAACCGATGGGAAGTTCGTTGCGGACCCACGATTTGAAGAA GTGAAGGATTATGTGAGGAGCGGTATATTTGGTGGTAACAATTACGACGAACTGCTTGGATCATTGGAAGGGAATGAAGGGTTTGGTAGGGGTGATTATT TCCTTGTAGGCAAGGATTTCCCTAGCTACATCGAGTGCCAAGAGGAGGTGGACATGGCATATCGAGATGAAAAGAAATGGACGAGAATGTCGATCATGAA TACGGCAGGCTCGTACAAGTTCAGCAGCGACAGAACGATCCACGAGTATGCCAAAGATATTTGGAATATCAAAGCTGTTAATGTCGAGTAA
AA sequence Show only first row Show all	>Lus10029644 pacid=23151989 polypeptide=Lus10029644 locus=Lus10029644.g ID=Lus10029644.BGIv1.0 annot-version=v1.0 MKVVSFLKEKTGYTVSPDAMFDIQVKRIHEYKRQLLNILGIVYRYKKMKESTVEERKNMYAPRVCIFGGKAFATYVQAKRIVKFITDVGATINHDPEIGD LLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCVLIGTLDGANVEIRQEVGEDNFFLFGAPADEIAGLRKERTDGKFVADPRFEE VKDYVRSGIFGGNNYDELLGSLEGNEGFGRGDYFLVGKDFPSYIECQEEVDMAYRDEKKWTRMSIMNTAGSYKFSSDRTIHEYAKDIWNIKAVNVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Lus10029644 [exp]	0	1
AT2G44380			Cysteine/Histidine-rich C1 dom...		Lus10003919 [exp]	5.4	0.9490
AT1G65900			unknown protein		Lus10007381 [exp]	6.2	0.9429
AT4G32690		ATGLB3, GLB3	ARABIDOPSIS HEMOGLOBIN 3, hemo...		Lus10022120 [exp]	8.1	0.9366
AT5G21050			unknown protein		Lus10001150 [exp]	9.4	0.8978
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10038233 [exp]	12.6	0.9407
AT5G55410			Bifunctional inhibitor/lipid-t...		Lus10032575 [exp]	18.0	0.9397
					Lus10042887 [exp]	19.6	0.9355
AT1G51160			SNARE-like superfamily protein...		Lus10039298 [exp]	20.0	0.8848
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10024616 [exp]	20.5	0.9379
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10007385 [exp]	23.8	0.9336

Compare expression of checked genes

Lus10029644 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.