Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48110 1372 / 0 MED33B, REF4 reduced epidermal fluorescence 4 (.1) AT3G23590 1283 / 0 MED33A, RFR1 REF4-related 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000663 [exp] 1950 / 0 AT2G48110 1484 / 0.0 reduced epidermal fluorescence 4 (.1) Lus10027998 [exp] 1820 / 0 AT2G48110 1370 / 0.0 reduced epidermal fluorescence 4 (.1) Lus10034021 [exp] 1417 / 0 AT3G23590 1721 / 0.0 REF4-related 1 (.1) Lus10004434 [exp] 1412 / 0 AT3G23590 1722 / 0.0 REF4-related 1 (.1) Lus10041229 [exp] 1311 / 0 AT3G23590 1595 / 0.0 REF4-related 1 (.1) Lus10042689 [exp] 489 / 5e-159 AT2G48110 324 / 4e-98 reduced epidermal fluorescence 4 (.1) Lus10028033 [exp] 0 / 1 AT2G48120 91 / 6e-22 pale cress protein (PAC) (.1), pale cress protein (PAC) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G215600 [exp] 1665 / 0 AT2G48110 1371 / 0.0 reduced epidermal fluorescence 4 (.1) Potri.014G138400 [exp] 1639 / 0 AT2G48110 1424 / 0.0 reduced epidermal fluorescence 4 (.1) Potri.008G201600 [exp] 1427 / 0 AT3G23590 1682 / 0.0 REF4-related 1 (.1) Potri.016G142500 [exp] 887 / 0 AT3G23590 871 / 0.0 REF4-related 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029646 pacid=23152065 polypeptide=Lus10029646 locus=Lus10029646.g ID=Lus10029646.BGIv1.0 annot-version=v1.0 ATGGAGGACTCCGTACGTCCTATTCCGGAGAGCGTGTGGGACTCCGTCCGCCAGCTCACCAAGTCGGCTCAGGACAAGAACTCTGATCCTCTCCAATGGA CGATTCAGCTCAGTGCCTGTCTCGCTCCCGCCGGAGTCGAGTTTCCTTCCGTCGATCTCGCTCACCTCTTGGTTTCCCATTTATGTTTCGATAACCACGT CCCTACTGCCTGGAAGTTTCTCGACAAGGCCCTCACTGTCAATGTCGTCCCTCCCATGCTCGTCCTCGCGCTTCTCTCTGCCAGGGTGATTCCGAACCGG CAATTGCACCCTTCTGCTTACAGACTTTATATGGAGCTTGTGAAACGACATGCCTTTGCCTTTTCGTCTGAACTCAGCTGCCCAAATTTTCCCAAGATAA TGGAATCCCTAGATGATGTGCTTCATCTGTCTGACGTGTTTGGACTTCAAGTGAACGAACCAGGGCTTCTTCTAGTGCAGTTTGTGTTTTCAGTTGTATG GCAGTTGCTTGATGCTACAATTGATGATGAAGGGTTACTGGAACTCACATTGGACAAGAAATCGAAGTGGTTTACAGTATCACAAGATATGGAGATAGAT GGCTCTGTTGGGGAACGAAATGAACATAGTGATGGGTTGATGAAAAGAAATACTTCAATGGCCATTGAGCTTATTGCAGAGTTTTTGCAGAATAGATTTA CTTCGAGGATTCTTCACCTGGCTTGTGCAAACATGCCTTCACATTGGAAAAGCTTCACTCAAGGACTGGATATACTTTTAGCACATTCAGCAACTTTAAG AAGTTCGAAACTTCTCTTGTCAGAGGACCTTGAGCAGCTTCTATCCAAACTTACCATCCCTTTCCATCGAGTTTTCGAGACAAAAATACAGCTGGATCAT CATGCACTTATATCTTCCGCCTCTATCAAATCCTCTGCTGGCCAATGGCATGGGACAAGTCAGTCGGAACTCTGGCTTCCTATCGATATGTTTCTCGAAG ATTGCATGGACGGGTCACCATTGGTTGTAGTTTGTGCTATACAGAATCTAATTGGGCTGGTTACAGCTTTGCGGGCCTTAAATGGTTGTACATGGCATGA CACCTTTTTGGGACTATGGACTGCAGCTTTACGGCTTGTTCAAAGGGGGAGAGATTCCTGTGAGGGTCCTGTTCCCCGTCTTGATACCTGCCTCTGCTTG TTACTCTCTATCACAACACATGCGGTGACTGAAATTATTGAGGATGAAGAGAGTGAACCGGTTGAGGACACTGCATGCCACCCCACTGCTCAAAGTAAAG AGAAACAGGGCCCAGGCACATGCCGTCAAGGTCTCATTACCGCGTTACAGTCACTGGGTGATTATGAAGCCTTGCTCACTCCACCTCATTCTATTATTTC CATGGCAAATCAGGCTGCTGCCAAGGCAGTAGTATCTGTCTCCGGCCTTGCTGCTAATAATGGCTATTATGAAAACTTGAGCATTAATGACATGCCGATT GATTGTTCGGGTAACCTGAGGCATCTAATAGTTGAAGCTTGTATTGCAAGAAATGTGTTGGACACATCCGCATACTTGTGGCCAGGCTATGTTGGAGTGT GCACCAGTCAAGTTCCTAGCCAAATGACTGGCTGGTCATCATTGATGAAGGGATCGCCAATGACACCTGCAATGATAAGCATCTTGGTGGCAACTCCAGC TTCCTGCTTACTAGAGATCGAGAAAATATTTGAGATTGCTGTCAATGGCTCCGATGATGAGAAGATATCAGCTGCTACCATACTATGTGGGGCATCTCTT GTTCGTGGTTGGAATGTGCAGGAGCACACTATACCATTTATCATAAAATTGCTCTCGCCATCTGTTCCACCAGATTACTCTGGAGGCAGGAGCCATTTAT TTGATCATGCTACGTTGTTTTATGTTCTTCTTCTCCGAATGTCATCGGCAGACTGTTCACAGATATTATCCTTACATGGCATGGCTCCTTTGCTTGCTGG TGCACTGATGCCCATCTGTGAGGTCTTTGGATCAGCTGCTCCTGAAACCTCCTGGATTCTTCCAACAGGGGAACAAGTCAGCTGTCATGATGTCTTTTCA TGTGCATTCTCGCTTTTAGTGAGACTGTGGAGATTCCAATTTCCGCCTTTGGAGCAAGTAACGGGGGATTTTACTGCGGGCTTACAATTAAGCCCTGAAT ACTTGTTGATGGTACGGAATACTCGGTTAGGAGCCTTTGCGAAGTCACCAAGAGATCAGATACGACGAAAAAGATTCTCGACAAAACTAAAGATATCTTT GGATTCTATATTCCTGGATTCTTTTCCCAAATTCAAAATCTGGTACCGGCACCATCTGGAATGTATTTCTTGCGTCTTTTCTGGTCTTGCACCTGGAACT CCTGTTCACCAGATTGTCGATGCACTGCTCATCGTTATGTTCAGAAAGGTGAACGAAAATTCCCACGCTTCGAGAGATACATCTTCAGGAACTAGTAACT CATCAGGCCCTTCAGTTGAGGAGGCATTAACTAAACTGAAAGTTCCTGCTTGGGATATCTTAGAAGCTACTCCGTTTGCCCTTAATGCAGCTCTGACTGC TTGTGGCCATGGGAAGCTTTCTCCTCGTGAACTTGCTACAGGTCTTAGAGTTCTTGCTGATTTTCTACCAGCAACTTTGGCCACAATAACAAGCTTCTTT TCTGCTGAAGTTACAAGGGGCGTATGGAAGCCTGCTTGTATGAATGGAAGTGATTGGCCAAGCCCTGCTGCAAATCTGGTCTCCGTAGAGCAGCAAATAA AGAATATACTAGCAGCCACTGGAGTTGACGTGCCAAGCCTTGCCGTAGCGGGGAGCTCTCCCGAAACACTTCCCTTGCCATTAGCTTCACTAGTAAGCCT CACCATCACATACAAGTTAGAAGAAGCATCTGACCGCTTCCTAACTATAATCGTCCCGGCCTTGACTGCCCTTGCCGCTGGTTGTCCCTGGCCATGTATG CCCGTCATATCCTCTCTATGGATTCAGAAAGCTCGGCGATTGAACGACTTCATTGTCTTCCACGCCTCACAAACCGTCTTCCACCACAACATCGATGCTG CAGTTCAGCTCCTGAAAAGCTGCTTCACATCCACGCTAGGCATGGCTCCAACCCACATTTCCAGCACTAGCGGCGTCGGTGCTCTCCTAGGCCACGGTTT CGGCTCTCGCCGTTCAGGCGGTACTATATCCCCAGTTGCCCCCGGGATCCTCTACCTAAAAGTGCACCGAGCGATCAGGGATGTCATGTTGATGACAGAA CAAATCCTGTCTCTTCTTATGGATTCCGTCAGAGAGATTGCAAGCAGTGGCTTACCCAAAGACGCTGCATCAAAATTGAGAAACACCAAGCATGGAATAA TGAGGTATGGCCAGCTCTCCATAGCCGGCGCGATGAGACGTGTCAAACTCGCAGCATCGCTCGGAGCTTCGTTGGTATGGATTACAGGCGGGCCGAATTT AGTTCAGTCCCTAATGAAAGAAACCTTACCTTCTTGGTTCATATCAGAACACAGTGAGGAGGAGTCCGGAAGAACTAGTGAGATGGTTGCCACGCTGGGA GGGTACGGCCTGGCATATTTTGCATTGATGTGCGGGACATTTGCGTGGGGGGTTGATTCTACTTCTGCAGCATCGAAAAGACGGCCGAAAGTTTTGTCGG CACACTTGGAGTTTCTGGCGAGTGCATTGGACGGGAAAGTATCACTGGGTTGTGACTGGAAGACGGCGCATGCATACGTCACCGTGTTTGTGGGGCTAAT GGTGGCTTGCACGCCGAAATGGGTGAAAGAAGTGGACGTGGGTACACTTAAGAGGCTTAGCAAAGGGTTGAGACAGCTGAACGAGACCGAACTCGCGCTG TCCTTGTTGGGATGTGGTGGGGTTGGCGCCATGGGTGCTGCTGCGGAGCTGGCTGTGCATTGCAGGTTGTTTGATTAG
AA sequence Show only first row Show all	>Lus10029646 pacid=23152065 polypeptide=Lus10029646 locus=Lus10029646.g ID=Lus10029646.BGIv1.0 annot-version=v1.0 MEDSVRPIPESVWDSVRQLTKSAQDKNSDPLQWTIQLSACLAPAGVEFPSVDLAHLLVSHLCFDNHVPTAWKFLDKALTVNVVPPMLVLALLSARVIPNR QLHPSAYRLYMELVKRHAFAFSSELSCPNFPKIMESLDDVLHLSDVFGLQVNEPGLLLVQFVFSVVWQLLDATIDDEGLLELTLDKKSKWFTVSQDMEID GSVGERNEHSDGLMKRNTSMAIELIAEFLQNRFTSRILHLACANMPSHWKSFTQGLDILLAHSATLRSSKLLLSEDLEQLLSKLTIPFHRVFETKIQLDH HALISSASIKSSAGQWHGTSQSELWLPIDMFLEDCMDGSPLVVVCAIQNLIGLVTALRALNGCTWHDTFLGLWTAALRLVQRGRDSCEGPVPRLDTCLCL LLSITTHAVTEIIEDEESEPVEDTACHPTAQSKEKQGPGTCRQGLITALQSLGDYEALLTPPHSIISMANQAAAKAVVSVSGLAANNGYYENLSINDMPI DCSGNLRHLIVEACIARNVLDTSAYLWPGYVGVCTSQVPSQMTGWSSLMKGSPMTPAMISILVATPASCLLEIEKIFEIAVNGSDDEKISAATILCGASL VRGWNVQEHTIPFIIKLLSPSVPPDYSGGRSHLFDHATLFYVLLLRMSSADCSQILSLHGMAPLLAGALMPICEVFGSAAPETSWILPTGEQVSCHDVFS CAFSLLVRLWRFQFPPLEQVTGDFTAGLQLSPEYLLMVRNTRLGAFAKSPRDQIRRKRFSTKLKISLDSIFLDSFPKFKIWYRHHLECISCVFSGLAPGT PVHQIVDALLIVMFRKVNENSHASRDTSSGTSNSSGPSVEEALTKLKVPAWDILEATPFALNAALTACGHGKLSPRELATGLRVLADFLPATLATITSFF SAEVTRGVWKPACMNGSDWPSPAANLVSVEQQIKNILAATGVDVPSLAVAGSSPETLPLPLASLVSLTITYKLEEASDRFLTIIVPALTALAAGCPWPCM PVISSLWIQKARRLNDFIVFHASQTVFHHNIDAAVQLLKSCFTSTLGMAPTHISSTSGVGALLGHGFGSRRSGGTISPVAPGILYLKVHRAIRDVMLMTE QILSLLMDSVREIASSGLPKDAASKLRNTKHGIMRYGQLSIAGAMRRVKLAASLGASLVWITGGPNLVQSLMKETLPSWFISEHSEEESGRTSEMVATLG GYGLAYFALMCGTFAWGVDSTSAASKRRPKVLSAHLEFLASALDGKVSLGCDWKTAHAYVTVFVGLMVACTPKWVKEVDVGTLKRLSKGLRQLNETELAL SLLGCGGVGAMGAAAELAVHCRLFD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G48110		MED33B, REF4	reduced epidermal fluorescence...		Lus10029646 [exp]	0	1
AT3G44530		HIRA	homolog of histone chaperone H...		Lus10004893 [exp]	1.7	0.9360
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10026594 [exp]	2.2	0.9388
AT5G61930		APO3	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10004105 [exp]	5.3	0.9101
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Lus10038007 [exp]	7.1	0.8992
AT5G55830			Concanavalin A-like lectin pro...		Lus10016620 [exp]	8.2	0.9366
AT4G32730	MYB	ATMYB3R-1, PC-M...	C-MYB-LIKE TRANSCRIPTION FACTO...		Lus10022136 [exp]	8.7	0.9230
AT5G14610			DEAD box RNA helicase family p...		Lus10001272 [exp]	10.3	0.8977
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10003701 [exp]	12.0	0.9253
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10001586 [exp]	12.4	0.9297
AT3G11830			TCP-1/cpn60 chaperonin family ...		Lus10026773 [exp]	14.3	0.9262

Compare expression of checked genes

Lus10029646 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.