Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63095 84 / 1e-18 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G26040 43 / 0.0002 HXXXD-type acyl-transferase family protein (.1) AT1G24430 43 / 0.0003 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004441 [exp] 131 / 1e-34 AT3G26040 196 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10002893 [exp] 123 / 1e-31 AT5G47950 195 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10000319 [exp] 118 / 1e-29 AT3G26040 198 / 2e-58 HXXXD-type acyl-transferase family protein (.1) Lus10012759 [exp] 115 / 8e-29 AT3G26040 209 / 3e-62 HXXXD-type acyl-transferase family protein (.1) Lus10028013 [exp] 101 / 2e-25 AT3G63095 37 / 0.009 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001107 [exp] 101 / 1e-23 AT3G26040 193 / 2e-56 HXXXD-type acyl-transferase family protein (.1) Lus10012374 [exp] 101 / 2e-23 AT3G63090 503 / 8e-176 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10016353 [exp] 99 / 5e-23 AT3G26040 201 / 1e-59 HXXXD-type acyl-transferase family protein (.1) Lus10036126 [exp] 99 / 1e-22 AT3G26040 189 / 6e-55 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G124268 [exp] 93 / 6e-21 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124500 [exp] 93 / 6e-21 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124156 [exp] 89 / 1e-19 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1) Potri.014G139100 [exp] 84 / 1e-19 AT3G63095 76 / 4e-17 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G124128 [exp] 86 / 2e-18 AT3G26040 282 / 1e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 86 / 2e-18 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 86 / 2e-18 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.014G139200 [exp] 77 / 7e-17 AT3G63095 69 / 2e-14 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G034100 [exp] 76 / 5e-15 AT3G26040 270 / 4e-86 HXXXD-type acyl-transferase family protein (.1) Potri.008G033500 [exp] 74 / 1e-14 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029648 pacid=23152007 polypeptide=Lus10029648 locus=Lus10029648.g ID=Lus10029648.BGIv1.0 annot-version=v1.0 ATGAAGGATCTGGTACCGATACTTAGAGAAGGCGTTGCGGGAGTTGACCAGAATTACCTCAACGCCATCTCCGGCGAACGAGGGTTTGAGGCCATGGTTG AAGGGCAGAAGTGGTTGGCGGGGTTAATGAGTAGTGGTCAAAAGGTTCCTAGTTGCTCAAGCTGGAATGGATTTGGGATCAATGATTTTGACTTCGGATT AGGAAATCCCGTTTGGACTGGCGTCGATGGAGATATTGTTGGAGGTGCAGATCATGTGGCTCTTGCGAATTCCATTATTTTGAAGGACTTAGGGGCTCGT CGAGGAGGGGATGGACATGATCATAAGAGTAATGAAATGGAGGCATGGATGAGGATGGATAAGGATGCCATGGATGCTCTTGAACGAGATCCAGAGTTCT TGAAATTTGCTTCCAATTCGTCTATCCCACTATCAGAGAATCATGCACTGCATGGCCGAGTTTTGATGGCATCATGTCCAGGCCTTCTTCTGGTTGTCGT TCATGTCTCCAAGACTGATGCCCAGAGACATCGCCCCCCTCTCTGCTCACAGCAGTTTTCCCTCGCAAACTATGCTTGCGTGAATCTCCCATTCATGCCA TTATTAGCAGCCGCTCGTTCCCCACCGTCGGATGCTCCACCCTCATCTTCGAAAGCCAAGACGACTGCTTCTCCTCCTCCTCCATCAACAACTGAAAGGA CCACTCCACCCTCTCCTCCCACCCTTCCTGGGAGGAGAGGTGGCAGGCACAGGCATCGTAGGCACCACCGGCATCCCCGTGTTGGTGATGACGGTAGTGG TGATGATGATGACGTTGCTGATGTTGGACCTCCAGCTTCGCCTGCAGAAGAGAATTGTTGCAGGTGGCTGAAAGAGATGGATTCGGAATGTGTGTGTGAT GTTTTGGTTCGTTTGCCCCCTTTCCTCGCGAAACCTTCTCATGTGTACTCTGTCCATGTCTATGACGGCTGCATTGTCACTTTCTCTTGCTCTGGCCGAA TAGTGCCTTGA
AA sequence Show only first row Show all	>Lus10029648 pacid=23152007 polypeptide=Lus10029648 locus=Lus10029648.g ID=Lus10029648.BGIv1.0 annot-version=v1.0 MKDLVPILREGVAGVDQNYLNAISGERGFEAMVEGQKWLAGLMSSGQKVPSCSSWNGFGINDFDFGLGNPVWTGVDGDIVGGADHVALANSIILKDLGAR RGGDGHDHKSNEMEAWMRMDKDAMDALERDPEFLKFASNSSIPLSENHALHGRVLMASCPGLLLVVVHVSKTDAQRHRPPLCSQQFSLANYACVNLPFMP LLAAARSPPSDAPPSSSKAKTTASPPPPSTTERTTPPSPPTLPGRRGGRHRHRRHHRHPRVGDDGSGDDDDVADVGPPASPAEENCCRWLKEMDSECVCD VLVRLPPFLAKPSHVYSVHVYDGCIVTFSCSGRIVP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63095			Tetratricopeptide repeat (TPR)...		Lus10029648 [exp]	0	1
AT3G25600			Calcium-binding EF-hand family...		Lus10034405 [exp]	11.2	0.8004
AT4G36910		CBSX1, CDCP2, L...	LOSS OF THE TIMING OF ET AND J...		Lus10041576 [exp]	20.6	0.7776
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Lus10040091 [exp]	21.4	0.7843
AT4G33355			Bifunctional inhibitor/lipid-t...		Lus10023087 [exp]	26.5	0.7648
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Lus10010440 [exp]	28.5	0.7523
AT2G37860		LCD1	LOWER CELL DENSITY 1, Protein ...		Lus10012657 [exp]	30.9	0.7800
AT1G71100		RSW10	RADIAL SWELLING 10, Ribose 5-p...		Lus10042951 [exp]	31.2	0.7784
AT4G08980		FBW2	F-BOX WITH WD-40 2 (.1.2.3.4.5...		Lus10036483 [exp]	45.2	0.6996
AT5G44710			unknown protein		Lus10038399 [exp]	52.9	0.7729
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Lus10028707 [exp]	56.9	0.7436

Compare expression of checked genes

Lus10029648 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.