Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48150 274 / 2e-95 ATGPX4 glutathione peroxidase 4 (.1) AT3G63080 262 / 6e-91 ATGPX5, MEE42 maternal effect embryo arrest 42, glutathione peroxidase 5 (.1) AT4G11600 240 / 2e-81 LSC803, PHGPX, ATGPX6 glutathione peroxidase 6 (.1) AT4G31870 217 / 4e-72 ATGPX7 glutathione peroxidase 7 (.1) AT2G25080 216 / 9e-72 ATGPX1 glutathione peroxidase 1 (.1) AT2G31570 213 / 1e-71 ATGPX2 glutathione peroxidase 2 (.1) AT1G63460 204 / 6e-68 ATGPX8 glutathione peroxidase 8 (.1) AT2G43350 196 / 2e-64 ATGPX3 glutathione peroxidase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008022 [exp] 245 / 6e-84 AT4G11600 301 / 1e-105 glutathione peroxidase 6 (.1) Lus10008537 [exp] 243 / 2e-83 AT4G11600 299 / 1e-104 glutathione peroxidase 6 (.1) Lus10008499 [exp] 244 / 6e-83 AT4G11600 307 / 2e-106 glutathione peroxidase 6 (.1) Lus10042692 [exp] 215 / 4e-73 AT2G48150 188 / 2e-62 glutathione peroxidase 4 (.1) Lus10027021 [exp] 216 / 1e-72 AT2G31570 266 / 2e-92 glutathione peroxidase 2 (.1) Lus10000603 [exp] 214 / 4e-72 AT4G11600 256 / 9e-88 glutathione peroxidase 6 (.1) Lus10008023 [exp] 218 / 6e-72 AT1G63460 265 / 9e-91 glutathione peroxidase 8 (.1) Lus10026887 [exp] 216 / 1e-71 AT4G31870 332 / 3e-116 glutathione peroxidase 7 (.1) Lus10000601 [exp] 210 / 3e-70 AT1G63460 256 / 2e-88 glutathione peroxidase 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G138800 [exp] 278 / 5e-97 AT2G48150 271 / 1e-94 glutathione peroxidase 4 (.1) Potri.003G126100 [exp] 248 / 4e-84 AT4G11600 307 / 9e-107 glutathione peroxidase 6 (.1) Potri.001G105200 [exp] 240 / 4e-82 AT4G11600 298 / 3e-104 glutathione peroxidase 6 (.1) Potri.001G105100 [exp] 219 / 9e-74 AT1G63460 283 / 5e-99 glutathione peroxidase 8 (.1) Potri.006G265400 [exp] 221 / 1e-73 AT2G25080 343 / 6e-121 glutathione peroxidase 1 (.1) Potri.007G126600 [exp] 219 / 2e-73 AT2G31570 281 / 1e-97 glutathione peroxidase 2 (.1) Potri.018G017500 [exp] 149 / 2e-46 AT2G25080 209 / 4e-69 glutathione peroxidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00255 [flax] [poplar] GSHPx Glutathione peroxidase
Representative CDS sequence Show only first row Show all	>Lus10029651 pacid=23152157 polypeptide=Lus10029651 locus=Lus10029651.g ID=Lus10029651.BGIv1.0 annot-version=v1.0 ATGGGGATTTCTGGGTCAGTGCCGGAGAAATCAATCCACGAATTCACCGTCAAGGATAGCAGAGGTAAGGATGTGGAGCTCAGCATCTATCAGGGGAAGG TTCTTCTGGTTGTTAACGTCGCTTCCAAATGCGGTTTCACTGATACAAATTACACCCAGTTGACTGATCTCTATCAAAAATACAAGGACCAAGGTTTTGA AATTCTGGCATTCCCTTGCAACCAATTCTTGAACCAGGAGCCTGGCACAAGTGAGGAGGCACAGGAGTTTGCTTGTACTAGATACAAGGCTGAGTATCCA ATTTTCCAGAAGGTACGTGTGAATGGGAAACAGGCTGCACCACTGTACAAATTCCTAAAGACTTACAAAAACGGTTTCATGGGCTCAAGGATAAAGTGGA ATTTCACCAAGTTCCTCATCAGCAAAGAAGGACAAGTGGTCGGTCGGTTTGGCCCGACCGTTTCCCCTCTGTCGATGGAGACACACATCAAGAAAGAACT GGGAGACCAAGAATGA
AA sequence Show only first row Show all	>Lus10029651 pacid=23152157 polypeptide=Lus10029651 locus=Lus10029651.g ID=Lus10029651.BGIv1.0 annot-version=v1.0 MGISGSVPEKSIHEFTVKDSRGKDVELSIYQGKVLLVVNVASKCGFTDTNYTQLTDLYQKYKDQGFEILAFPCNQFLNQEPGTSEEAQEFACTRYKAEYP IFQKVRVNGKQAAPLYKFLKTYKNGFMGSRIKWNFTKFLISKEGQVVGRFGPTVSPLSMETHIKKELGDQE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G48150		ATGPX4	glutathione peroxidase 4 (.1)		Lus10029651 [exp]	0	1
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10030481 [exp]	1.4	0.8642
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10012832 [exp]	6.3	0.8192
AT4G13530			unknown protein		Lus10003531 [exp]	10.6	0.8352
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10000920 [exp]	15.3	0.8382
AT4G30360		ATCNGC17	cyclic nucleotide-gated channe...		Lus10023203 [exp]	16.6	0.8444
AT1G53400			Ubiquitin domain-containing pr...		Lus10015233 [exp]	18.0	0.8004
AT1G79660			unknown protein		Lus10024088 [exp]	21.9	0.8233
AT2G25310			Protein of unknown function (D...		Lus10001919 [exp]	23.0	0.7917
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10017822 [exp]	27.2	0.8277
AT2G37480			unknown protein		Lus10024420 [exp]	27.8	0.8228

Compare expression of checked genes

Lus10029651 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.