Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008802 [exp] 110 / 2e-29 ND / Lus10033900 [exp] 87 / 5e-21 ND / Lus10019381 [exp] 78 / 3e-17 ND / Lus10033901 [exp] 69 / 7e-15 ND / Lus10032678 [exp] 69 / 9e-14 ND / Lus10003639 [exp] 64 / 9e-12 ND / Lus10016935 [exp] 61 / 1e-11 ND / Lus10008385 [exp] 58 / 6e-11 ND / Lus10026801 [exp] 62 / 9e-11 AT5G24530 142 / 7e-38 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029652 pacid=23152038 polypeptide=Lus10029652 locus=Lus10029652.g ID=Lus10029652.BGIv1.0 annot-version=v1.0 ATGATGACAGCGACAAACTGTTGGAGGGTGACCCTGAACTATGCTTGTTACCTAAATGCAGAAATCGTTGCTCTTGCGGGTTTCCATTGCGGGAAGCACG TGGTTGACCGCCTACTGGCTAGGTTGGATGACTATACACGGAAGTCAACGTATCCTGGTGGGGATATGAACTTCATGGTGATGCATGCCTTCATAATCAT GTTATATGCATTATGTGCAGCTGACAATGCTGACCGAGTTGCGTGCGACGAGGTAGTCAGGCAAGCTGTAGTGTTCCAAAAAGAGAATGAGGAATTAGCA CTCTGGAAGTTGCGGCTCCAAACCACGTCACAGCTGCTGGACGTTTTGAAGGATAAACTGTCATTACGGCCGTCAGATCTGCACATCGCTGGTGGATGCA ATGACACTCCAGCTGAACCGGGAGAAGTTTTCAAAAACGGCGCATACACAAGATTCTGCTTCCCATGCTCCGTCACGGCTACTGCCCGTGAGGAGGTAGA GAATGGAATTGCATACGTGCCGGAGGAAGCCTCAGAAGTGCGTCGACTCATGACCACCATCCATCCCAATTTTGCAGCCTTCGGCGAGCACAAATATAAA ATATTCTCAGCTCCTTCAAACACCTTCAGGTGCAGAGACATGGAAAGTGGCTGCAACACCTTTGTGCGGTGCAAGAAGAAGGAGAACGATGACCAAAATG AGGTTGATGGCGTTCCGGTGTATGACTACGTGGTCCTTCGTAACCTAGAGCTGGAAGATAGGGTTGACTGCCTCAGTTCTAGAATCTACCAGTTGGAAGA GGATAGTGATCGTGAGGAGTGGTGGAACGACGACGACTGGCATAGTTCCCCCTAA
AA sequence Show only first row Show all	>Lus10029652 pacid=23152038 polypeptide=Lus10029652 locus=Lus10029652.g ID=Lus10029652.BGIv1.0 annot-version=v1.0 MMTATNCWRVTLNYACYLNAEIVALAGFHCGKHVVDRLLARLDDYTRKSTYPGGDMNFMVMHAFIIMLYALCAADNADRVACDEVVRQAVVFQKENEELA LWKLRLQTTSQLLDVLKDKLSLRPSDLHIAGGCNDTPAEPGEVFKNGAYTRFCFPCSVTATAREEVENGIAYVPEEASEVRRLMTTIHPNFAAFGEHKYK IFSAPSNTFRCRDMESGCNTFVRCKKKENDDQNEVDGVPVYDYVVLRNLELEDRVDCLSSRIYQLEEDSDREEWWNDDDWHSSP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10029652 [exp]	0	1
					Lus10043004 [exp]	8.8	0.9904
					Lus10011078 [exp]	12.4	0.9904
AT5G37820		NIP4;2, NLM5	NODULIN- 26-LIKE MAJOR INTRINS...		Lus10025744 [exp]	14.7	0.8782
					Lus10011832 [exp]	15.2	0.9904
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10025763 [exp]	17.5	0.9904
					Lus10029617 [exp]	18.7	0.9194
					Lus10027689 [exp]	19.6	0.9904
AT4G18840			Pentatricopeptide repeat (PPR-...		Lus10036420 [exp]	20.7	0.8793
					Lus10022518 [exp]	21.5	0.9904
AT2G20420			ATP citrate lyase (ACL) family...		Lus10022902 [exp]	23.2	0.9904

Compare expression of checked genes

Lus10029652 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.