Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45890 143 / 1e-42 SAG12 senescence-associated gene 12 (.1) AT1G20850 137 / 2e-40 XCP2 xylem cysteine peptidase 2 (.1) AT5G50260 136 / 8e-40 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT3G48340 136 / 9e-40 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1) AT5G43060 130 / 6e-37 Granulin repeat cysteine protease family protein (.1) AT3G19390 128 / 7e-36 Granulin repeat cysteine protease family protein (.1) AT4G35350 126 / 8e-36 XCP1 xylem cysteine peptidase 1 (.1.2) AT4G36880 125 / 3e-35 CP1 cysteine proteinase1 (.1) AT1G47128 123 / 5e-34 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) AT3G19400 120 / 9e-34 Cysteine proteinases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042691 [exp] 221 / 4e-74 AT5G50260 321 / 5e-110 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10029649 [exp] 220 / 2e-72 AT5G45890 386 / 2e-134 senescence-associated gene 12 (.1) Lus10042693 [exp] 218 / 2e-71 AT5G45890 379 / 1e-131 senescence-associated gene 12 (.1) Lus10029658 [exp] 214 / 3e-70 AT5G45890 383 / 4e-133 senescence-associated gene 12 (.1) Lus10006542 [exp] 166 / 2e-51 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10026362 [exp] 164 / 8e-51 AT5G45890 396 / 2e-138 senescence-associated gene 12 (.1) Lus10020722 [exp] 164 / 2e-50 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10020730 [exp] 163 / 4e-50 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10003275 [exp] 162 / 8e-50 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G064900 [exp] 157 / 4e-48 AT5G45890 401 / 3e-140 senescence-associated gene 12 (.1) Potri.007G075300 [exp] 153 / 3e-46 AT5G45890 406 / 6e-142 senescence-associated gene 12 (.1) Potri.007G076000 [exp] 152 / 3e-46 AT5G45890 407 / 2e-142 senescence-associated gene 12 (.1) Potri.005G088600 [exp] 153 / 4e-46 AT5G45890 406 / 8e-142 senescence-associated gene 12 (.1) Potri.007G075900 [exp] 153 / 4e-46 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G076100 [exp] 153 / 4e-46 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.005G089100 [exp] 151 / 1e-45 AT5G45890 405 / 1e-141 senescence-associated gene 12 (.1) Potri.013G118200 [exp] 149 / 5e-45 AT5G45890 387 / 2e-135 senescence-associated gene 12 (.1) Potri.013G126100 [exp] 149 / 1e-44 AT5G45890 386 / 2e-134 senescence-associated gene 12 (.1) Potri.015G087400 [exp] 149 / 2e-44 AT5G50260 550 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease
Representative CDS sequence Show only first row Show all	>Lus10029653 pacid=23152145 polypeptide=Lus10029653 locus=Lus10029653.g ID=Lus10029653.BGIv1.0 annot-version=v1.0 ATGAAGATCTCAACAGCGAAGTTGGTATCGCTTTCGGAGCAAGAACTGATCGACTGCGACAGAACGAGTAACGACCAAGGATGCAACAGAGGCTTCATGG ATGACGCTTTTCAATATGTGAAGAGCAAAGGCCTCACAACTGAATCCAACTATCCTTATACGGTAGCAGATGGAACTTGCAACGCGGTCAAGACAAACCC TTCTTCGGACAAGATCAACGGTTACGAGGATGTACCTGCCAACGACGAGAAATCGATGTTTAAGGCCGCGGCTAACCAGCCTATCTCTGTGGCCATTGAT GCCAGTGGCTCTGCTTTCCAGTTTTACTCGAGTGGAATGTTCATCGGAGTGTGGCACGGATTTGGATCATGGTGTGGCTGTGGTAGGATCATAGTTCAAG TATGA
AA sequence Show only first row Show all	>Lus10029653 pacid=23152145 polypeptide=Lus10029653 locus=Lus10029653.g ID=Lus10029653.BGIv1.0 annot-version=v1.0 MKISTAKLVSLSEQELIDCDRTSNDQGCNRGFMDDAFQYVKSKGLTTESNYPYTVADGTCNAVKTNPSSDKINGYEDVPANDEKSMFKAAANQPISVAID ASGSAFQFYSSGMFIGVWHGFGSWCGCGRIIVQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10029653 [exp]	0	1

Compare expression of checked genes

Lus10029653 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.