Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G36390 181 / 5e-55 Co-chaperone GrpE family protein (.1.2) AT5G17710 181 / 2e-54 EMB1241 embryo defective 1241, Co-chaperone GrpE family protein (.1.2) AT4G26780 50 / 1e-06 MGE2, AR192 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042696 [exp] 521 / 0 AT1G36390 210 / 5e-66 Co-chaperone GrpE family protein (.1.2) Lus10028034 [exp] 317 / 5e-107 AT5G17710 222 / 3e-70 embryo defective 1241, Co-chaperone GrpE family protein (.1.2) Lus10003741 [exp] 317 / 7e-107 AT5G17710 222 / 3e-70 embryo defective 1241, Co-chaperone GrpE family protein (.1.2) Lus10024760 [exp] 228 / 6e-73 AT1G36390 209 / 2e-66 Co-chaperone GrpE family protein (.1.2) Lus10000783 [exp] 44 / 0.0001 AT5G55220 336 / 5e-109 trigger factor type chaperone family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G090000 [exp] 255 / 3e-83 AT1G36390 233 / 8e-76 Co-chaperone GrpE family protein (.1.2) Potri.005G171201 [exp] 219 / 3e-69 AT1G36390 213 / 7e-68 Co-chaperone GrpE family protein (.1.2) Potri.013G067900 [exp] 176 / 5e-52 AT5G17710 313 / 9e-106 embryo defective 1241, Co-chaperone GrpE family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01025 [flax] [poplar] GrpE GrpE
Representative CDS sequence Show only first row Show all	>Lus10029654 pacid=23152101 polypeptide=Lus10029654 locus=Lus10029654.g ID=Lus10029654.BGIv1.0 annot-version=v1.0 ATGGCGATGCCTCTCTCCAATCCCACACTCATCTCCTCCCATCCTCCTCCTAGCCTCTCTGCACATAAAACCCTTACTTTCACCTCACCCACCACTCCTT TATTCCTCTCCTTCCTCCCACACAAACCTTTCCATGGATTCAATTTGGCCTCCGTTCCTGCTCTACCACCGAAACTCAGCAGCAACAACTACATCCATGG CTCCCCTTCTTTCCTTCCTCGTTGTGCACCCCACCAAGCTGAAGCTGCCTCCGCCGATTCTGCTACTCTTATAAATGAAGAAGAGGGTAATCTACAGAAT GATGAAGTAAACGATACAGAAGAGGAAGAAGAAGAAGAAGACAATGCGGCAAGTGAAACCAAGGAGCAGGGAGAAGGAGAACCTGAACAATCAACTCCGC AGAACGACTCAGACTTGAAGAGTCTTATCGCCAGTTTTCGAGAAGCTATACTATCTGGTGATCAGGACGCTGCTTCCAAGATCGAGGCTAAGATCAACGA CATAGAAGTAAATGTCGACAGCGAACTCATACAAAAGGTTTCAGCTTTATCAGCGGAGGTAACATCGGGAAGAGACCGGTACGTTCGCCTTCAAGCAGAT TTCGAAAATTTCAGGAGAAGGTCCGAAACCGAGAGGCTGAACATCAGGAGCGATGCACAAGGAGCAGTGATCGAGAGCCTACTGCCCATGGTCGACAGTT TCGAGAGGGCCAAGCAGCAATTGAAACCGGAAACCGAGAAGGAGAAGCAAATCGACGCAAGTTATCAGGGTATATACAAGCAGTTTGTGGAGATCATGAA AGGTTTGCAGGTGTCTGCGGTACCAACGGTTGGGCATCCTTTTGATCCTTCGGTGCATGAAGCAATTGCGAGGGAGGAATCTGAAGAGTATGAGGAAGGA ATTGTAGTACAGGAGTTCAGGCGGGGGTTTTGCATTGGAGACCGGCTAATAAGACCAGCTATGGTTAAAGTCTCGGAAGGGCCTGGTCCTAAAGTAAGTA AGGAAGCTGCTACTGCTGCTGGTCCTGGGCAGGAACAAGAAGCTGCTACAGCAGAATAA
AA sequence Show only first row Show all	>Lus10029654 pacid=23152101 polypeptide=Lus10029654 locus=Lus10029654.g ID=Lus10029654.BGIv1.0 annot-version=v1.0 MAMPLSNPTLISSHPPPSLSAHKTLTFTSPTTPLFLSFLPHKPFHGFNLASVPALPPKLSSNNYIHGSPSFLPRCAPHQAEAASADSATLINEEEGNLQN DEVNDTEEEEEEEDNAASETKEQGEGEPEQSTPQNDSDLKSLIASFREAILSGDQDAASKIEAKINDIEVNVDSELIQKVSALSAEVTSGRDRYVRLQAD FENFRRRSETERLNIRSDAQGAVIESLLPMVDSFERAKQQLKPETEKEKQIDASYQGIYKQFVEIMKGLQVSAVPTVGHPFDPSVHEAIAREESEEYEEG IVVQEFRRGFCIGDRLIRPAMVKVSEGPGPKVSKEAATAAGPGQEQEAATAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17710		EMB1241	embryo defective 1241, Co-chap...		Lus10029654 [exp]	0	1
AT5G50250		CP31B	chloroplast RNA-binding protei...		Lus10041952 [exp]	1.0	0.9030
AT2G33250			unknown protein		Lus10023703 [exp]	5.0	0.8256
AT5G66530			Galactose mutarotase-like supe...		Lus10028310 [exp]	5.8	0.8452
AT3G46790		CRR2	CHLORORESPIRATORY REDUCTION 2,...		Lus10004987 [exp]	11.6	0.7968
AT1G67660			Restriction endonuclease, type...		Lus10006437 [exp]	18.4	0.7939
AT5G57180		CIA2	chloroplast import apparatus 2...		Lus10020012 [exp]	22.2	0.7812
AT1G67660			Restriction endonuclease, type...		Lus10011377 [exp]	22.4	0.7926
AT3G27850		RPL12-C	ribosomal protein L12-C (.1)		Lus10022261 [exp]	23.3	0.8430
AT5G50250		CP31B	chloroplast RNA-binding protei...		Lus10017962 [exp]	24.0	0.8246
AT5G13510		EMB3136	EMBRYO DEFECTIVE 3136, Ribosom...		Lus10001982 [exp]	26.0	0.8286

Compare expression of checked genes

Lus10029654 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.