Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G36990 283 / 3e-88 unknown protein AT4G08510 233 / 2e-69 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042697 [exp] 803 / 0 AT1G36990 352 / 4e-115 unknown protein Lus10028037 [exp] 477 / 1e-163 AT1G36990 370 / 3e-121 unknown protein Lus10003744 [exp] 460 / 5e-157 AT1G36990 361 / 9e-118 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G172100 [exp] 428 / 3e-144 AT1G36990 250 / 3e-75 unknown protein Potri.002G089100 [exp] 408 / 1e-136 AT1G36990 281 / 5e-87 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029655 pacid=23151974 polypeptide=Lus10029655 locus=Lus10029655.g ID=Lus10029655.BGIv1.0 annot-version=v1.0 ATGGAAAGAAGTGAACCCACATTAATTCCAGAATGGTTGAGAACTACTGGAAGTGTTTCAGGAGGTGGACATTCTGCCCATCACTTTGCTTCGTCTTCTT CCCACTCAGATCTTTCTTCATCTTCAAATCCCTTGAGGAGCCGGAACTTTAAGAGTATTAGTGACTTTGATTCTCCACGCCTGCCCTTTTTGGACCGATC ATCTTCATCTAACTCTCGCAGGAGTTCCAGTAATGGGTCTGGGAAGCATGCATACAGTAGTTTTAGTAGAAATCATCGCGACAAAGATAGAGATAGGGAC AAAGATAAGCCGAGCTTTACGGACCATTGGGATCGTGACTCTTCTGATCCTTTGGGAAGCATGTTAATGGGTAGAACTGATAAGGACACATTAAGGCGTT CTCACTCAATGATATCCAGGAAACAGAGCGAGATGTTACCCCGTAGGGTTGCATCAGACCTGAGAAATGGAAGTAGCAGCAGTCATGTAAATGGAAATGG CTTGATATCTGGTGTTGTTATGGGTAATACTGCTCAAAAGGCTACCTTTGAGAAGGACTTTCCTTCTCTTGGAACTGAGGAGAGAGCAGTCATGCATGAT GTAGTGAGGGTCTCATCTCCTGGTTTGAGCAATGTTGTACAGAGTTTGTCTGTTGGGAGTTCTGCATTAATTAATGGGGAAGGATGGACATCTGCTCTGG CAGAAGTGCCTCCTGCTGTTGGAACCTGTAGCACAGGTCCGACACCTAGTGTGCAAATTGTTGCCTCATCTGCATCTGCTGCGTCAATTGCTATGGCGGG TCTTAACATGGCTGAAGCGTTGACTCAGGCTCCTGCTAAAGCTCGTACAATGCCACAGGTTGTAAGTGCATCTGACAAATTAAAGCCAAAAGCTGTAGTT AGATCTGGGGAGATGAATGTTGCCAAAAATTTGCAGCAGCAGCCTTCGTTTCCTATTACCAATCAATCCCTTCTTGGGAAATCTGAGGCACCGAAGGCAT CTCATGGGAAACTTTTTATCCTCAAACAAGGTAGAGAAAATGGTGTAACCCCTTCTCTAAAGGATGTTGCCACAAATAGTACCGTCAGATTAACAAATAC CCAACCGGTGGCTACTTCTGTTGTCTCCGCCGCACCTCCGAGGAGTCCAAATAAACCAAAGAGTTTATCTGGGGAACGAAAGGCAGCTGGATTGATCCCT GGGTTTAGTGTTGAAAAGAAACCCTCCTTGTCTCAGACCCGGAGTAGGAATGATTTCTTTAATCTTCTGAAGAAGAAAACCTCTGGAAATGCTTCTGCTG TCACATCCGATTCAGCATCTGGTGTTTCACCTGATACTCGTGAAGTATTAAATGTGGAGAGTAAAGAGTTGGTCAGTGATCAGGAAAGACCTCAAGCTTC AATTGATGGTGCTCAGTTAACTAGCAACGGTAGTGCTGATCCCTCTGAGCAAGTTCAGAGATTTTCCGAGGAGGAGTCTGCATTCCTTCGTTCCCTTGGT TGGGAAGAAACTTCCGGAGAGGATGAAGGCCTTACCCAAGAGGAGATCAATGCTTTCTATCAGGAGGTAAAAAAAGACACTTGCTACTTAGCTAGGTTTT GA
AA sequence Show only first row Show all	>Lus10029655 pacid=23151974 polypeptide=Lus10029655 locus=Lus10029655.g ID=Lus10029655.BGIv1.0 annot-version=v1.0 MERSEPTLIPEWLRTTGSVSGGGHSAHHFASSSSHSDLSSSSNPLRSRNFKSISDFDSPRLPFLDRSSSSNSRRSSSNGSGKHAYSSFSRNHRDKDRDRD KDKPSFTDHWDRDSSDPLGSMLMGRTDKDTLRRSHSMISRKQSEMLPRRVASDLRNGSSSSHVNGNGLISGVVMGNTAQKATFEKDFPSLGTEERAVMHD VVRVSSPGLSNVVQSLSVGSSALINGEGWTSALAEVPPAVGTCSTGPTPSVQIVASSASAASIAMAGLNMAEALTQAPAKARTMPQVVSASDKLKPKAVV RSGEMNVAKNLQQQPSFPITNQSLLGKSEAPKASHGKLFILKQGRENGVTPSLKDVATNSTVRLTNTQPVATSVVSAAPPRSPNKPKSLSGERKAAGLIP GFSVEKKPSLSQTRSRNDFFNLLKKKTSGNASAVTSDSASGVSPDTREVLNVESKELVSDQERPQASIDGAQLTSNGSADPSEQVQRFSEEESAFLRSLG WEETSGEDEGLTQEEINAFYQEVKKDTCYLARF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G36990			unknown protein		Lus10029655 [exp]	0	1
AT1G36990			unknown protein		Lus10042697 [exp]	1.7	0.9404
AT5G46920			Intron maturase, type II famil...		Lus10003020 [exp]	3.2	0.9326
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10016048 [exp]	3.3	0.9502
AT1G17630			Pentatricopeptide repeat (PPR-...		Lus10003790 [exp]	3.5	0.9346
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Lus10007652 [exp]	3.5	0.9323
AT3G44530		HIRA	homolog of histone chaperone H...		Lus10020585 [exp]	3.7	0.9265
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10025168 [exp]	4.7	0.9478
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Lus10010577 [exp]	6.2	0.9114
AT1G05055		ATGTF2H2, GTF2H...	general transcription factor I...		Lus10029294 [exp]	6.2	0.8957
AT2G30780			Tetratricopeptide repeat (TPR)...		Lus10029620 [exp]	6.6	0.9055

Compare expression of checked genes

Lus10029655 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.