Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45890 383 / 4e-133 SAG12 senescence-associated gene 12 (.1) AT5G50260 354 / 1e-121 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT3G19390 348 / 9e-118 Granulin repeat cysteine protease family protein (.1) AT2G27420 340 / 3e-116 Cysteine proteinases superfamily protein (.1) AT3G48340 339 / 2e-115 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1) AT2G34080 331 / 9e-113 Cysteine proteinases superfamily protein (.1) AT1G20850 332 / 1e-112 XCP2 xylem cysteine peptidase 2 (.1) AT4G35350 332 / 1e-112 XCP1 xylem cysteine peptidase 1 (.1.2) AT3G19400 330 / 4e-112 Cysteine proteinases superfamily protein (.1.2) AT3G49340 329 / 5e-112 Cysteine proteinases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029649 [exp] 637 / 0 AT5G45890 386 / 2e-134 senescence-associated gene 12 (.1) Lus10042693 [exp] 629 / 0 AT5G45890 379 / 1e-131 senescence-associated gene 12 (.1) Lus10042691 [exp] 476 / 3e-171 AT5G50260 321 / 5e-110 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10006542 [exp] 437 / 3e-154 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10032406 [exp] 436 / 3e-154 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10003275 [exp] 436 / 4e-154 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10026362 [exp] 436 / 4e-154 AT5G45890 396 / 2e-138 senescence-associated gene 12 (.1) Lus10020722 [exp] 434 / 3e-153 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10028501 [exp] 434 / 4e-153 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G064900 [exp] 460 / 1e-163 AT5G45890 401 / 3e-140 senescence-associated gene 12 (.1) Potri.013G126100 [exp] 436 / 7e-154 AT5G45890 386 / 2e-134 senescence-associated gene 12 (.1) Potri.013G118400 [exp] 427 / 2e-150 AT5G45890 378 / 2e-131 senescence-associated gene 12 (.1) Potri.013G118200 [exp] 426 / 2e-150 AT5G45890 387 / 2e-135 senescence-associated gene 12 (.1) Potri.005G088600 [exp] 421 / 1e-147 AT5G45890 406 / 8e-142 senescence-associated gene 12 (.1) Potri.005G089100 [exp] 420 / 1e-147 AT5G45890 405 / 1e-141 senescence-associated gene 12 (.1) Potri.007G075300 [exp] 417 / 3e-146 AT5G45890 406 / 6e-142 senescence-associated gene 12 (.1) Potri.007G076000 [exp] 416 / 3e-146 AT5G45890 407 / 2e-142 senescence-associated gene 12 (.1) Potri.007G076100 [exp] 416 / 9e-146 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G075900 [exp] 416 / 9e-146 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF08246 [flax] [poplar] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Lus10029658 pacid=23152003 polypeptide=Lus10029658 locus=Lus10029658.g ID=Lus10029658.BGIv1.0 annot-version=v1.0 ATGGCTCCTTCTTCTTCCTCACTTGTTTCCAACAAGCTGATGTTAGTGTTGGTGTTGCTGATGGGGATCTATGCATATGGAGCCTTCTCTGCATCACCCC CTCGTGCTAGCATGAACGAAAGGTTCGAAGCATGGATTGCGAAGAATGGACGTGTCTACGAAGATGCAGGAGAGAAGACCAGACGATTCGCGATTTTTAA GAAGACTGTGGGCTTCGTTAACCACTTCAACAAGTTTGGGAACAAAACTTACAAGTTAGCTGTGAATCAATATGCAGACTTGACCAACAAGGAATTCATG GCTTCCAAAACTGGATACAAGAAGAAGCCTTCCAATCTCGGATCTTCATTGTCGTTCAAGTACCAGAATGCAAGCTCAGTGCCAGACACCATGGATTGGA GAACTAAAGGAGCTGTCAATCCCGTTAAAGATCAAGGCCAATGCGGATCTTGTTGGGCATTCTCTGCTGTGGCGGCAGTGGAAGGACTAATGAAGATCTC AACAGGGAAGTTGGTATCACTTTCAGAGCAAGAACTGATGGACTGCGACAGAAGGAGTAACGACCAAGGATGCAACGGAGGATTCATGGACGACGCTTTT CAATATGTGAAGAGCAAAGGTCTCACAACTGAATCCAACTACCCTTACACGGCAGCAGATGGAACTTGCAATGCAGCTAAGACAAACCCTTCTTCGGCCA AGATCAATGGCTACGAAGATGTACCTGCCAACGACGAGAAATCACTGCTTAATGCCGCGGCTAACCAGCCAATCTCTGTGGCCATTGATGCCAGTGGCTC TGCTTTCCAGTTCTACTCGAGTGGAGTGTTCACCGGAGAGTGTGGCACGGATTTGGATCATGGTGTGGCTGTCATAGGGTATGGAACGAGCACCGATGGT TCGAAGTACTGGCTGGTGAGGAACTCGTGGGGGACGAGTTGGGGAGATGGAGGGTACATCAAGATGCAGAGAGATGTTGGTGCTAAAGAAGGTCTCTGTG GCATTGCTATGTCTGCTTCCTATCCTACTGCTTACTGCTGA
AA sequence Show only first row Show all	>Lus10029658 pacid=23152003 polypeptide=Lus10029658 locus=Lus10029658.g ID=Lus10029658.BGIv1.0 annot-version=v1.0 MAPSSSSLVSNKLMLVLVLLMGIYAYGAFSASPPRASMNERFEAWIAKNGRVYEDAGEKTRRFAIFKKTVGFVNHFNKFGNKTYKLAVNQYADLTNKEFM ASKTGYKKKPSNLGSSLSFKYQNASSVPDTMDWRTKGAVNPVKDQGQCGSCWAFSAVAAVEGLMKISTGKLVSLSEQELMDCDRRSNDQGCNGGFMDDAF QYVKSKGLTTESNYPYTAADGTCNAAKTNPSSAKINGYEDVPANDEKSLLNAAANQPISVAIDASGSAFQFYSSGVFTGECGTDLDHGVAVIGYGTSTDG SKYWLVRNSWGTSWGDGGYIKMQRDVGAKEGLCGIAMSASYPTAYC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10029658 [exp]	0	1
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10014228 [exp]	3.6	0.9271
AT5G25310			Exostosin family protein (.1)		Lus10001917 [exp]	4.7	0.7896
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10015614 [exp]	5.5	0.9110
					Lus10006529 [exp]	6.7	0.9110
					Lus10022109 [exp]	7.7	0.8290
					Lus10035557 [exp]	7.7	0.9110
AT3G52490			Double Clp-N motif-containing ...		Lus10024536 [exp]	8.7	0.9110
					Lus10028091 [exp]	9.2	0.7746
AT5G40480		EMB3012	embryo defective 3012 (.1)		Lus10002516 [exp]	9.5	0.8084
					Lus10013260 [exp]	9.5	0.9110

Compare expression of checked genes

Lus10029658 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.