Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63410 490 / 3e-166 Leucine-rich repeat protein kinase family protein (.1) AT5G14210 340 / 6e-107 Leucine-rich repeat protein kinase family protein (.1) AT3G03770 265 / 1e-78 Leucine-rich repeat protein kinase family protein (.1.2) AT1G14390 254 / 5e-75 Leucine-rich repeat protein kinase family protein (.1) AT2G02780 227 / 6e-65 Leucine-rich repeat protein kinase family protein (.1) AT2G23950 138 / 2e-34 Leucine-rich repeat protein kinase family protein (.1) AT1G60800 127 / 1e-30 NIK3 NSP-interacting kinase 3 (.1) AT5G07280 127 / 3e-30 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G20140 125 / 2e-29 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT2G02220 124 / 3e-29 ATPSKR1 phytosulfokin receptor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032058 [exp] 357 / 2e-113 AT5G14210 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035225 [exp] 348 / 4e-110 AT5G14210 854 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032059 [exp] 341 / 3e-107 AT5G14210 870 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10041589 [exp] 330 / 7e-105 AT5G14210 520 / 2e-176 Leucine-rich repeat protein kinase family protein (.1) Lus10022340 [exp] 325 / 3e-101 AT5G14210 876 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030785 [exp] 280 / 9e-85 AT1G14390 630 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10013262 [exp] 277 / 8e-84 AT1G14390 632 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10005689 [exp] 244 / 6e-71 AT3G03770 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10020303 [exp] 239 / 3e-69 AT3G03770 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G095600 [exp] 447 / 1e-148 AT5G14210 720 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G093100 [exp] 414 / 1e-135 AT5G14210 681 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G333300 [exp] 394 / 7e-128 AT5G14210 854 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G147700 [exp] 288 / 7e-88 AT1G14390 675 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G039000 [exp] 261 / 3e-77 AT3G03770 933 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G064300 [exp] 245 / 4e-71 AT3G03770 896 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.008G014300 [exp] 214 / 2e-60 AT3G03770 692 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.004G059100 [exp] 135 / 2e-33 AT5G45780 837 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G075000 [exp] 130 / 2e-31 AT4G20140 1371 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.004G095700 [exp] 129 / 3e-31 AT2G01210 735 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10029659 pacid=23152031 polypeptide=Lus10029659 locus=Lus10029659.g ID=Lus10029659.BGIv1.0 annot-version=v1.0 ATGGCTCATCATTCCTTCATCCAGCTGCTGCTGCTGCCACTTGTAACATGGATGATTTTCCTACTTCAACCCACAAACCAGTTGCAATCATCCCAAACAC AAGTCCTTCTTCAGTTAAGAAAGCATTTGGAGTACCCACCTCAGCTCCAAATCTGGAACCTTTATTATCACACTACTGATCTTTGCTATTTGCAGCCTTC CAAGCTTGTCAACATATCATGCCAAGACAATTCCATTACTGAGCTCAAAATCATGGGATCACTCAATAATCATAACCAGACTTTGTCAGCTGGATTCTCC ATGGATTCATTTGTTGCTACATTAGCAAGGCTAAACAGCTTGAGAGTCCTCTCCCTTGTCTCTTTAGGGATTTGGGGTCCTCTCCCTGACAAAATACACA GGCTTGGTTCTTCACTTGAGTATTTGGATTTGAGTTCGAACCATCTCTTTGGTTCACTCCCTCCCAAGATCTCAACCATGGTAAAGCTTCAAACTTTAAT CCTCAGCAACAATTTTTTCAATTCCACAATTCCCAGGGAATACAGCCAGCTAAACCAGCTTCAAAACCTTGACTTTTCGTTCAATGAGTTGACTGGAACG ATTCCAGATTCCCTTTTCGCATTGGATAACATCAAATCTCTGAATTTGGGATCCAATATGCTGAGTGGTACACTTCCAGACAGCCTGAGATGTGGGGGAA GTCTTGAGTTTGTGGACATATCAAGCAACAGGTTAATAGGTGGACTGCCTTCTTGCTTGGTGACTGGATCAGAAGATGATAAAAGATCATTAGTATTGAA GCTTGGTGGGAATTGCTTGCACTCAAGTTCCTTGTATCAGCAGCAACGTCCTGAATCAGACTGTACTCAAGTTCCACTTGCTGTGGAAAGTAAGCAATCT GGAGGGAGGAGAAGAAACCTTGGTGTTATGGTTGGGTTTGTGGCTGGAATTCTTGCCGTCGTAGCACTTTTGGCTTTTGGTTTTGTTGTTCTGTACAGAA GAAAGTTCCTCTCCAGAGAGCATTTGCTGCGAGTGGATCCGGTTGAGCTCCTCTCTTCTCGAAGTACCGGATTTGTATCCCAAGCTTCAAAAGTGGGTAG TGAAGGTCTTCCAGCTTGCCGGTCATTTGCTGTAGAAGAATTGAAGAAAGCTACAAACAACTTTGACAATGCTACTGTTCTTGGCGAAGGTTATTATGGA AAGATGTACAAAGGAAGGTTGGAAGATGGAACCCAAGTTGCAATCAGGTGCCTGCCAACATCAAACAAGTACACAACTCGAAACCTTAAGCTGAGGCTCG ACTTACTAGCGAAACTCCGTCATCCGAATTTGGTCTGCCTTCTTGGACACTGCATTGACAATGGAGGGCAAGAAGATGAATACAGAGTGGACCAAGTGTT CCTTGTATACGAACACATAAGTGATGGAAATTTCCAGACTCGGGTCTTTGGAAATTCGATGAATTGGGCGGAGAGATTAGCAGCTCTGACTGGTGTGGCT AAGGCTTTGCATTTTCTGCATACTGGTGTGATTCCGGGTTTCTTCAACAACCGGTTGAAGACACATAATATCCTTGTCAATGAGCATGGGATGACCAAGT TGAGCGATTACGGGCTGTCAATTGTATCAGATGAGAATCGGAATTCTGCGGCATCCAGTAGCAGCCAAGAAAAGTTGATGAACCCAACAGTGGTGGCAAC TGCTTCACAAGAATCACTAACGACAGTGATATCTATAACAGAGAAATGCATCAGCCCAGAATCTGCCGCAACCCGGCCCTCCTTGGAGGACATACTTTGG AACTTGCAGTATGCTGCTCAGATTCAAGCAGGGTGTTAA
AA sequence Show only first row Show all	>Lus10029659 pacid=23152031 polypeptide=Lus10029659 locus=Lus10029659.g ID=Lus10029659.BGIv1.0 annot-version=v1.0 MAHHSFIQLLLLPLVTWMIFLLQPTNQLQSSQTQVLLQLRKHLEYPPQLQIWNLYYHTTDLCYLQPSKLVNISCQDNSITELKIMGSLNNHNQTLSAGFS MDSFVATLARLNSLRVLSLVSLGIWGPLPDKIHRLGSSLEYLDLSSNHLFGSLPPKISTMVKLQTLILSNNFFNSTIPREYSQLNQLQNLDFSFNELTGT IPDSLFALDNIKSLNLGSNMLSGTLPDSLRCGGSLEFVDISSNRLIGGLPSCLVTGSEDDKRSLVLKLGGNCLHSSSLYQQQRPESDCTQVPLAVESKQS GGRRRNLGVMVGFVAGILAVVALLAFGFVVLYRRKFLSREHLLRVDPVELLSSRSTGFVSQASKVGSEGLPACRSFAVEELKKATNNFDNATVLGEGYYG KMYKGRLEDGTQVAIRCLPTSNKYTTRNLKLRLDLLAKLRHPNLVCLLGHCIDNGGQEDEYRVDQVFLVYEHISDGNFQTRVFGNSMNWAERLAALTGVA KALHFLHTGVIPGFFNNRLKTHNILVNEHGMTKLSDYGLSIVSDENRNSAASSSSQEKLMNPTVVATASQESLTTVISITEKCISPESAATRPSLEDILW NLQYAAQIQAGC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63410			Leucine-rich repeat protein ki...		Lus10029659 [exp]	0	1
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10034675 [exp]	4.7	0.8276
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10038278 [exp]	6.7	0.8180
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10024604 [exp]	9.3	0.8230
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10032241 [exp]	12.6	0.8051
AT3G54400			Eukaryotic aspartyl protease f...		Lus10039503 [exp]	16.1	0.7670
AT1G35780			unknown protein		Lus10020921 [exp]	17.7	0.8003
AT3G44510			alpha/beta-Hydrolases superfam...		Lus10004879 [exp]	19.9	0.6728
AT5G47900			Protein of unknown function (D...		Lus10039223 [exp]	23.2	0.7957
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10022645 [exp]	25.1	0.7747
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10025823 [exp]	27.1	0.7533

Compare expression of checked genes

Lus10029659 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.