Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21980 1051 / 0 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT1G77740 1047 / 0 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT2G26420 781 / 0 PIP5K3 1-phosphatidylinositol-4-phosphate 5-kinase 3 (.1) AT3G56960 706 / 0 PIP5K4 phosphatidyl inositol monophosphate 5 kinase 4 (.1) AT2G41210 701 / 0 PIP5K5 phosphatidylinositol- 4-phosphate 5-kinase 5 (.1) AT3G07960 521 / 1e-175 PIP5K6 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT3G09920 419 / 4e-135 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) AT1G60890 371 / 5e-117 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT1G10900 365 / 4e-115 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT1G01460 266 / 2e-81 ATPIPK11 Phosphatidylinositol-4-phosphate 5-kinase, core (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025636 [exp] 1209 / 0 AT1G21980 1170 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10018200 [exp] 1204 / 0 AT1G21980 1172 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10008651 [exp] 671 / 0 AT3G07960 990 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10002734 [exp] 666 / 0 AT3G07960 990 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10010458 [exp] 630 / 0 AT3G56960 1147 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10003819 [exp] 628 / 0 AT3G56960 1148 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10014408 [exp] 535 / 1e-179 AT3G09920 1228 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10023909 [exp] 520 / 1e-173 AT3G09920 1210 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10020821 [exp] 497 / 9e-166 AT1G60890 935 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G172800 [exp] 1170 / 0 AT1G21980 1139 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.002G088100 [exp] 1144 / 0 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.019G015768 [exp] 893 / 0 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.004G139900 [exp] 886 / 0 AT1G21980 948 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.016G036800 [exp] 664 / 0 AT3G56960 1214 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Potri.001G027900 [exp] 495 / 1e-164 AT3G07960 1107 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.003G196000 [exp] 493 / 8e-164 AT3G07960 1094 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.006G121200 [exp] 426 / 1e-137 AT3G09920 1230 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Potri.001G211200 [exp] 380 / 2e-120 AT1G60890 1041 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.003G019100 [exp] 358 / 4e-112 AT1G60890 1004 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF01504 [flax] [poplar] PIP5K Phosphatidylinositol-4-phosphate 5-Kinase CL0251 [flax] [poplar] MORN PF02493 [flax] [poplar] MORN MORN repeat
Representative CDS sequence Show only first row Show all	>Lus10029661 pacid=23152155 polypeptide=Lus10029661 locus=Lus10029661.g ID=Lus10029661.BGIv1.0 annot-version=v1.0 ATGCGCGAGCGAGTAATCGTTAACGACGAGCTTGTTTCAATCCCTAAGAAAAAGAGGTCCGACGAAGGTGATAACAACAACAAGCTCAGCACTATTCTCG ACCGCCAGCTTCCAGCTGCGATTTCCTTACCTCCTCCTCAGCCGACACTGGTCGGCCGTCCCCGATCCCAGTCCGCCACTCGCCGAGTCACTCCTTCCGC CGCGGAGAGCTGTAGCGGCGCCGTGGAGAAGCGGCTACCCAACGGGGATCTCTACACCGGATCCTTCTCCGGCAGCGCCCCGCACGGATCCGGCAAGTAC TTGTGGTCGGACGGGTGCATGTACGAAGGGCAGTGGCGGCGAGGTAAAGCGTCAGGGAAAGGGAAGTTCTCATGGCCTTCCGGCGCCACATTCGAGGGGG AATTCAAGTCCGGCAGGATGGAAGGGTTCGGGACCTTCACCGGATTCGACGGGGATACATACCGGGGGTCGTGGAGCTCCGATCGGAAGCACGGCTACGG CCGGAAGCGGTACGTCAACGGAGATTTGTACGAAGGGAATTGGAAGAAGAATCAACAGGATGGACAGGGGCGGTACGTGTGGAGGAACGGGAATGAGTAC GTCGGTGAGTGGAAAAACGGGGTTATATCTGGGAAAGGGGAATTGATTTGGGCGAACGGGAATCGGTACGAAGGGCAATGGGAGAACGGAGTACCGAAAG GGAACGGAGTCTTCACCTGGCTGGACGGGAGTTGCTATGTTGGGACGTGGAACAGCGGTAATAATAAGGAACTGAAAGCTCAGCAGTTCAATGGGAAGGA ACTTTGCTTCAAAGGAAGCGAAGGGGATTTCGTTGCGACTATGGCGACGAGGAAGCGATCTTCGGTCGACGGTGGGAGAGGTAGTAGCAGCATTCATTTC CCAAGGATATGTATCTGGGACAGCGACGGTGAAGCTGGTGATATTACTTGTGATATCGTTGATAATCTGGAGGCATCCATGATTTACAGAGATGGCTTGG GATTATTGAGTGGAGATGGGATTCGTCAGTTTAGGAGAGGGCCCTGTTGTTCCGACGGGGAGGTTAAGAAGAAGGGCGGCCATATCATTTCCAAAGGACA TAAGAACTACGATTTGATGGTTAATTTGCAAGTGGGTATCAGGCATTCTGTTGGGAAACATGCTCAGACAGTTGGGGACTTGAAGCCTGGTGATTTCGAT CCCAATGAGAAGTTCTGGACAAGGTTCCCCGCAGAGGGATCAAAGGTTACACCTCCTCATCAATCAGTTGAGTTCAGGTGGAAGGACTACTGTCCTATGG TGTTCAGACATTTGAGGGAGCTATTTGAGGTTGATACCGCAGAGTACATGTTGGCCATCTGTGGGAATGATGCCTTCAGAGAGCTTTCATCTCCAGGAAA GAGTGGGAGTTTCTTTTATCTAACCCAGGATGATAGATTCATGATCAAGACGGTGAAGAAATCAGAAGTCAAGGTCCTCATTCGGATGCTTCCCAGTTAT TACCAACATGTTTGTAAATACCAGAACTCATTGCTGACAAAGTTCTTTGGCGTCCACTGTGTTAAGCCAATAGGAGGTCAAAAGACTCGTTTCATTGTGA TGGGGAACTTGTTCTGCTCTGGGTATAGAATACATAGAAGATTCGATCTAAAAGGATCGTCCCATGGTCGCACCATAAATAAACCTGAGGGCGAGATTGA TGAAAACACAACTCTCAAGGACCTCGATCTCAATTTTGTATTTCGAGTGCAGCAGAATTGGTACCAGGAGCTTATGAAGCAAATTGATCGAGATTGTGAA TTTCTAGAAGCCGAGAGGATAATGGACTACAGCCTCTTGGTTGGCCTTCACTTTCGAGATGACAGTACTTGTGACAAAATGGGATTATCACCATATGTTT TGCGCCCAGAGACCAATGATTCCTACCAAAACGAGAAGTTTATGCGCGGCTGTCGCTTCCTGGAGGCAGAGCTCCAAGATAGAGACCGAGTTTTAGCTGG CAGGAAGCCGTTGATAAGATTGGGAGCAAACATGCCGGCAAGAGCAGAGAGAATGGGTCGAAGGAGCGATTTTGATCAGTACAGAAGGCAGTTGAGTCAT CATCAGCCATGCAGGAGAGGGGAGGCATGGGAGGTGGTTCTTTATTTTGGGATCATCGACATATTGCAAGACTACGACATAAGCAAAAAGCTAGAGCACG CATACAAGTCGTTGCAAGTGGATCCAGCCTCAATCTCAGCGGTAGATCCTAAGCTCTACTCCAAGAGGTTCCGGGATTTCATAGGCCGAATATTCATAGA AGACAGGTAA
AA sequence Show only first row Show all	>Lus10029661 pacid=23152155 polypeptide=Lus10029661 locus=Lus10029661.g ID=Lus10029661.BGIv1.0 annot-version=v1.0 MRERVIVNDELVSIPKKKRSDEGDNNNKLSTILDRQLPAAISLPPPQPTLVGRPRSQSATRRVTPSAAESCSGAVEKRLPNGDLYTGSFSGSAPHGSGKY LWSDGCMYEGQWRRGKASGKGKFSWPSGATFEGEFKSGRMEGFGTFTGFDGDTYRGSWSSDRKHGYGRKRYVNGDLYEGNWKKNQQDGQGRYVWRNGNEY VGEWKNGVISGKGELIWANGNRYEGQWENGVPKGNGVFTWLDGSCYVGTWNSGNNKELKAQQFNGKELCFKGSEGDFVATMATRKRSSVDGGRGSSSIHF PRICIWDSDGEAGDITCDIVDNLEASMIYRDGLGLLSGDGIRQFRRGPCCSDGEVKKKGGHIISKGHKNYDLMVNLQVGIRHSVGKHAQTVGDLKPGDFD PNEKFWTRFPAEGSKVTPPHQSVEFRWKDYCPMVFRHLRELFEVDTAEYMLAICGNDAFRELSSPGKSGSFFYLTQDDRFMIKTVKKSEVKVLIRMLPSY YQHVCKYQNSLLTKFFGVHCVKPIGGQKTRFIVMGNLFCSGYRIHRRFDLKGSSHGRTINKPEGEIDENTTLKDLDLNFVFRVQQNWYQELMKQIDRDCE FLEAERIMDYSLLVGLHFRDDSTCDKMGLSPYVLRPETNDSYQNEKFMRGCRFLEAELQDRDRVLAGRKPLIRLGANMPARAERMGRRSDFDQYRRQLSH HQPCRRGEAWEVVLYFGIIDILQDYDISKKLEHAYKSLQVDPASISAVDPKLYSKRFRDFIGRIFIEDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21980		ATPIPK1, ATPIP5...	phosphatidylinositol-4-phospha...		Lus10029661 [exp]	0	1
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Lus10030202 [exp]	4.8	0.7661
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Lus10015639 [exp]	9.8	0.7115
AT5G18020			SAUR-like auxin-responsive pro...		Lus10039020 [exp]	14.6	0.7218
AT1G06750			P-loop containing nucleoside t...		Lus10021225 [exp]	18.5	0.6919
AT1G60010			unknown protein		Lus10029193 [exp]	21.9	0.6998
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Lus10002684 [exp]	29.7	0.7186
AT5G24170			Got1/Sft2-like vescicle transp...		Lus10019023 [exp]	32.2	0.6789
AT4G32000			Protein kinase superfamily pro...		Lus10001939 [exp]	42.0	0.6706
AT4G35140			Transducin/WD40 repeat-like su...		Lus10025088 [exp]	48.8	0.6456
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10005443 [exp]	51.3	0.6769

Compare expression of checked genes

Lus10029661 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.