Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39360 405 / 6e-145 EDL2 EID1-like 2 (.1) AT5G15440 401 / 1e-142 EDL1 EID1-like 1 (.1) AT3G63060 190 / 1e-59 EDL3 EID1-like 3 (.1) AT4G02440 40 / 0.001 EID1 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042699 [exp] 475 / 1e-172 AT5G39360 428 / 4e-154 EID1-like 2 (.1) Lus10025639 [exp] 455 / 2e-164 AT5G39360 429 / 2e-154 EID1-like 2 (.1) Lus10018196 [exp] 399 / 9e-143 AT5G39360 364 / 6e-129 EID1-like 2 (.1) Lus10028001 [exp] 197 / 4e-62 AT3G63060 312 / 6e-107 EID1-like 3 (.1) Lus10000659 [exp] 148 / 4e-44 AT3G63060 212 / 1e-68 EID1-like 3 (.1) Lus10007870 [exp] 54 / 2e-08 AT4G02440 399 / 9e-140 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1) Lus10030373 [exp] 50 / 5e-07 AT4G02440 407 / 8e-143 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G125000 [exp] 451 / 5e-163 AT5G39360 418 / 4e-150 EID1-like 2 (.1) Potri.017G090300 [exp] 437 / 2e-157 AT5G39360 415 / 1e-148 EID1-like 2 (.1) Potri.002G205150 [exp] 62 / 5e-11 AT4G02440 371 / 9e-129 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1) Potri.014G130000 [exp] 59 / 4e-10 AT4G02440 370 / 2e-128 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029662 pacid=23152048 polypeptide=Lus10029662 locus=Lus10029662.g ID=Lus10029662.BGIv1.0 annot-version=v1.0 ATGATATTAACAAAGCAATATCGATGTATACACTCATCGAGCTGTCAATGCACGAAAGGACATCTTAGTGAAGATGTGATATTCTTAGTCTTTCAACAGC TGAACTGGAACCCCAAGTTGATTGCTGCTCTATCATGTACATGCAAGTGGTTTGATGATCTTTGCAAGCGAGTATTGTGGAAGGAGTTCTGCAAGACGAG AGCTCCAAAGATGATGGTTGATCTACAATCCAGTGGAAGTCACAGTGTTGATGGAAACTGGAGGGCGCTTGGGAAGTTGCTTATATACTGTTCAGGATGT GTCAAGGGTGGCTTATTCAATAGCATTAATGTGCCTGGCCATTTTGTTTACAGGACTCGGTTTTCGAGAACATCCGGCAAAAGCTTTCTTTTGCCTCAAT GTAGAACGGATGTGTTATATGTCTCTGACCCATGTGAACATCTAGGCCAAGGGGATGAAGGGGATATAGGATTTTTTCGAGGAATATTCAAGTCATTCCC CATGTCAAAAGTCCGGAAGCTGCTGATTCAAAGAAGAGCACCACTGCACCCTACACATGTATGTCCATATTGCAAGGCAAAGCTTTGGAACATGCTGCAA GCAAGGATGATACCGCAGAGTGCCAGCTGCAGATTGGGTTCTTATGAGGATTGTATCGAGTATTTCGTGTGCCTTAATGGACATATGCTAGGAATCTGCA CCCTCTTACCATTGTCAGAGTCCGAAGAGGTGTCTGAACTTGACTGA
AA sequence Show only first row Show all	>Lus10029662 pacid=23152048 polypeptide=Lus10029662 locus=Lus10029662.g ID=Lus10029662.BGIv1.0 annot-version=v1.0 MILTKQYRCIHSSSCQCTKGHLSEDVIFLVFQQLNWNPKLIAALSCTCKWFDDLCKRVLWKEFCKTRAPKMMVDLQSSGSHSVDGNWRALGKLLIYCSGC VKGGLFNSINVPGHFVYRTRFSRTSGKSFLLPQCRTDVLYVSDPCEHLGQGDEGDIGFFRGIFKSFPMSKVRKLLIQRRAPLHPTHVCPYCKAKLWNMLQ ARMIPQSASCRLGSYEDCIEYFVCLNGHMLGICTLLPLSESEEVSELD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39360		EDL2	EID1-like 2 (.1)		Lus10029662 [exp]	0	1
AT2G17900		ASHR1, SDG37	ASH1-related 1, SET domain gro...		Lus10029712 [exp]	2.0	0.9101
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Lus10005091 [exp]	2.4	0.9140
AT5G51410			LUC7 N_terminus domain-contain...		Lus10031156 [exp]	2.4	0.8931
AT3G05675			BTB/POZ domain-containing prot...		Lus10013580 [exp]	8.5	0.8928
AT2G17787			unknown protein		Lus10017274 [exp]	10.5	0.8881
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Lus10033021 [exp]	11.4	0.8706
AT4G12010			Disease resistance protein (TI...		Lus10019654 [exp]	12.0	0.8738
AT5G51410			LUC7 N_terminus domain-contain...		Lus10031732 [exp]	13.0	0.8825
AT2G31560			Protein of unknown function (D...		Lus10027022 [exp]	13.2	0.8153
AT1G09920			TRAF-type zinc finger-related ...		Lus10028213 [exp]	15.1	0.8567

Compare expression of checked genes

Lus10029662 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.