Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44760 180 / 2e-57 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT1G69080 67 / 2e-13 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) AT2G03720 65 / 4e-13 MRH6 morphogenesis of root hair 6, Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT5G17390 65 / 1e-12 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT3G03290 62 / 2e-11 Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042701 [exp] 276 / 3e-95 AT1G44760 235 / 6e-79 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10025644 [exp] 174 / 3e-55 AT1G44760 211 / 1e-69 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10018190 [exp] 168 / 3e-53 AT1G44760 197 / 1e-64 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10019173 [exp] 79 / 5e-18 AT1G69080 192 / 2e-61 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10007982 [exp] 62 / 2e-11 AT5G17390 149 / 1e-43 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10034661 [exp] 61 / 3e-11 AT5G17390 160 / 3e-48 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10036814 [exp] 52 / 4e-09 AT1G69080 109 / 7e-32 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10023716 [exp] 42 / 5e-05 AT4G13450 136 / 2e-41 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10014459 [exp] 42 / 9e-05 AT4G13450 195 / 8e-63 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G177100 [exp] 186 / 1e-59 AT1G44760 226 / 3e-75 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.002G084600 [exp] 173 / 1e-54 AT1G44760 200 / 5e-65 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.010G140200 [exp] 75 / 2e-16 AT1G69080 202 / 3e-65 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.008G109000 [exp] 74 / 3e-16 AT1G69080 196 / 6e-63 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.T170801 [exp] 73 / 1e-15 AT1G69080 196 / 3e-63 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.015G060700 [exp] 67 / 1e-13 AT3G03290 198 / 2e-63 Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10029664 pacid=23151994 polypeptide=Lus10029664 locus=Lus10029664.g ID=Lus10029664.BGIv1.0 annot-version=v1.0 ATGCAGAGTCCAGGAGGAGCTTCATTTCTCAGGCAGCTGAGTGTTGGTGGAGGAATGGAAGGTTATAACAACTCCTACTACAATACCCAAATGGAAGATC ACTTCAATCGCGGATTCAATGGTGGTGGAGCGGGATTGGTGATGAGGAAGAGAGTGATGGTGGTTGTAGATCAGAGCTCTCATTCAAAGCATGCCATGAT TTGGGCACTCACTCATGTAGTCAACAAGTCTGATTTGTTGACTTTGCTTCACATCATTCCTCCTTCTTCCTCTTCTTCTCATTCTTCTCCTTCCCTTTTG GCCAACTCCCTTGGTTCCCTCTGCAAGGCCTGCAAACCTGAGGTGGAAGTGGAAGCGTTGGTGGTGCAAGGGCCAAAGTTTGCAACAGTGATGAGTCAAG TGAAGAAGCTGGATGTGGGTGTGTTAGTACTTGGTCAGAAGAAGTCTTCTTCCCTTTTCAGCTGCCTGTGTGGGAGAAGCAGCAGTGAAGAGTTTGTAGA GAAGTGCATCAAAAGTTTGGAATGCATGACAGTAGGGGTGAGGAAGCAGAGCAAAGGGATGAGTGGTTATCTCATCAGCACAAAATGGCAGAAGAACTTC TGGCTCTTAGCTTAG
AA sequence Show only first row Show all	>Lus10029664 pacid=23151994 polypeptide=Lus10029664 locus=Lus10029664.g ID=Lus10029664.BGIv1.0 annot-version=v1.0 MQSPGGASFLRQLSVGGGMEGYNNSYYNTQMEDHFNRGFNGGGAGLVMRKRVMVVVDQSSHSKHAMIWALTHVVNKSDLLTLLHIIPPSSSSSHSSPSLL ANSLGSLCKACKPEVEVEALVVQGPKFATVMSQVKKLDVGVLVLGQKKSSSLFSCLCGRSSSEEFVEKCIKSLECMTVGVRKQSKGMSGYLISTKWQKNF WLLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G44760			Adenine nucleotide alpha hydro...		Lus10029664 [exp]	0	1
					Lus10018463 [exp]	5.3	0.8768
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Lus10002442 [exp]	6.5	0.8627
AT3G53730			Histone superfamily protein (....		Lus10004949 [exp]	7.6	0.8635
AT2G45460	FHA		SMAD/FHA domain-containing pro...		Lus10009303 [exp]	9.5	0.7767
AT5G57410			Afadin/alpha-actinin-binding p...		Lus10019997 [exp]	12.6	0.8604
AT1G26680	B3	REM17	transcriptional factor B3 fami...		Lus10026921 [exp]	13.6	0.8620
AT5G08630			DDT domain-containing protein ...		Lus10039626 [exp]	14.1	0.8089
AT1G29395		COR413IM1, COR4...	cold regulated 414 thylakoid m...		Lus10004547 [exp]	14.5	0.7915
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Lus10024392 [exp]	15.1	0.8374
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10043442 [exp]	16.1	0.8286

Compare expression of checked genes

Lus10029664 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.