Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53750 238 / 5e-75 CBS domain-containing protein (.1) AT4G27460 233 / 2e-73 Cystathionine beta-synthase (CBS) family protein (.1) AT1G65320 73 / 5e-14 Cystathionine beta-synthase (CBS) family protein (.1) AT1G80090 45 / 4e-05 AtPV42b Cystathionine beta-synthase (CBS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042702 [exp] 602 / 0 AT5G53750 278 / 3e-90 CBS domain-containing protein (.1) Lus10018183 [exp] 476 / 3e-168 AT4G27460 298 / 3e-98 Cystathionine beta-synthase (CBS) family protein (.1) Lus10025651 [exp] 472 / 7e-167 AT4G27460 301 / 2e-99 Cystathionine beta-synthase (CBS) family protein (.1) Lus10011457 [exp] 87 / 1e-18 AT1G65320 485 / 2e-171 Cystathionine beta-synthase (CBS) family protein (.1) Lus10037535 [exp] 86 / 3e-18 AT1G65320 483 / 2e-170 Cystathionine beta-synthase (CBS) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G041000 [exp] 397 / 3e-137 AT5G53750 295 / 6e-97 CBS domain-containing protein (.1) Potri.011G050500 [exp] 369 / 4e-126 AT5G53750 261 / 1e-83 CBS domain-containing protein (.1) Potri.001G402900 [exp] 291 / 1e-95 AT5G53750 372 / 7e-127 CBS domain-containing protein (.1) Potri.011G122000 [exp] 289 / 1e-94 AT5G53750 355 / 6e-120 CBS domain-containing protein (.1) Potri.019G052650 [exp] 67 / 5e-12 AT1G65320 516 / 0.0 Cystathionine beta-synthase (CBS) family protein (.1) Potri.013G087100 [exp] 66 / 9e-12 AT1G65320 521 / 0.0 Cystathionine beta-synthase (CBS) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain
Representative CDS sequence Show only first row Show all	>Lus10029665 pacid=23152093 polypeptide=Lus10029665 locus=Lus10029665.g ID=Lus10029665.BGIv1.0 annot-version=v1.0 ATGGCAGATAGTTTGTTAGCTCGGGAGGTATCCGACTTATGCCTAGGCAAGCCCGTTCTCACTTCCCTCTCCATTTCCGCCACCGTCGCCGACGCCTTGT CCGCGCTCCGCCGCTCCGCTGACTCCTCTCCCTACCTAAGCGTCTGGAGCTGCGATCACCGCCCTCTCCGATCCAAACCCCTCAATGTAGGGTGTCGTTG CATCGGTAAGATCTGTATGGTCGATGTCATATGTTTCCTTGTTAGAGAAGACAATCTAAAAAACATCGCAATCGCGCTTCACAGACCCCTCTCCTTCCTC CTCATCGATTTCCCATCCGGCATCATCCGCCACTTGGAGCCTCACGCCAGTCTCTTGGAAGCGGTAGATCTGATCGCGGAAGGAGCGCAGAATCTGGTGA TTCCGATTCATAATCCTTTCTCGTCGAGGAAGAAGCTGTCTCAGATCCAGAGCTCGACGCTGCACAGCTACAATCGGGAGTACTGCTGGCTGACGCAGGA GGACATTATCCGTTACCTCCTCAATTGCATCGGTTTCTTCTCTCCTTTACCTAGTCAATCCATCGATGCTCTGAACATCATCGACAGTGAATCGATCTTC GCTGTCCGTTACGACAACCCTGCCTCTTCAGCTCTGCCGCTGATTTCTAAATCTCTGGTGAACCAGACCTCCGTGGCGATTCTGGACGATGAAGGCAGAT TAGTCGGCGAGATCTCTCCCGCCGCGTTGAATTGCTGTGACGAGTCGGCAGCGGCCGCAGTCGCCACACTTTCGGCAGGCGATCTGATGGCGTACGTCGA CTGCTTCGGTGATCTGCCGTTAGAGCTTGTGCGGATGGTGAAGGAAAGGCTAGAGGCGAAGAACTTTGAGGCGGCAGTGGAATTGGTAGTGGTGGAGGAG GAGGATTTGGGGGTCTCGTCGGACGAGGAGGAGTTGTTGGGACGCAGAACGAGCGGGCATTGGCCGAAAGTGGGGAGGAACACGGAGGATATAGTATGCC ATCGGTGGAGCTCGTTGGTGGCGGTGATGATCCAGATGCTGTCGCATCGGACGGGATACATTTGGGTGGTGGAAGACGACGGAGGTTTGGTCGGTGTTGT GACATACGCAGCTATGATCAAGGTTTTCCGGGAACGTGTGAAATCAATGTCGTAG
AA sequence Show only first row Show all	>Lus10029665 pacid=23152093 polypeptide=Lus10029665 locus=Lus10029665.g ID=Lus10029665.BGIv1.0 annot-version=v1.0 MADSLLAREVSDLCLGKPVLTSLSISATVADALSALRRSADSSPYLSVWSCDHRPLRSKPLNVGCRCIGKICMVDVICFLVREDNLKNIAIALHRPLSFL LIDFPSGIIRHLEPHASLLEAVDLIAEGAQNLVIPIHNPFSSRKKLSQIQSSTLHSYNREYCWLTQEDIIRYLLNCIGFFSPLPSQSIDALNIIDSESIF AVRYDNPASSALPLISKSLVNQTSVAILDDEGRLVGEISPAALNCCDESAAAAVATLSAGDLMAYVDCFGDLPLELVRMVKERLEAKNFEAAVELVVVEE EDLGVSSDEEELLGRRTSGHWPKVGRNTEDIVCHRWSSLVAVMIQMLSHRTGYIWVVEDDGGLVGVVTYAAMIKVFRERVKSMS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53750			CBS domain-containing protein ...		Lus10029665 [exp]	0	1
AT5G21070			unknown protein		Lus10026764 [exp]	4.7	0.8887
AT5G53750			CBS domain-containing protein ...		Lus10042702 [exp]	5.5	0.8887
AT3G56820			unknown protein		Lus10012105 [exp]	6.0	0.8717
AT4G35320			unknown protein		Lus10026561 [exp]	8.0	0.8792
AT4G09830			Uncharacterised conserved prot...		Lus10028692 [exp]	8.8	0.8557
AT2G29550		TUB7	tubulin beta-7 chain (.1)		Lus10023348 [exp]	9.3	0.8897
AT4G39220		ATRER1A	Rer1 family protein (.1)		Lus10011502 [exp]	11.2	0.8786
AT1G70330		"ENT1,AT", ENT1...	equilibrative nucleotide trans...		Lus10029162 [exp]	11.5	0.8470
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10036916 [exp]	11.9	0.8217
AT5G42660			Protein of unknown function (D...		Lus10032311 [exp]	12.2	0.8495

Compare expression of checked genes

Lus10029665 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.