Plant FIBer expression Database

Lus10029666 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G36230 245 / 8e-81 ARM repeat superfamily protein (.1)
AT1G65220 243 / 4e-80 ARM repeat superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042703
[exp]
0 / 1 AT5G36230 631 / 0.0 ARM repeat superfamily protein (.1)
Lus10018182
[exp]
0 / 1 AT5G36230 623 / 0.0 ARM repeat superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G085600
[exp]
264 / 4e-88 AT5G36230 687 / 0.0 ARM repeat superfamily protein (.1)
Potri.019G053600
[exp]
260 / 1e-86 AT5G36230 694 / 0.0 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10029666 pacid=23152149 polypeptide=Lus10029666 locus=Lus10029666.g ID=Lus10029666.BGIv1.0 annot-version=v1.0
ATGAGCTCGAAGGAGAAACCCACTCTCGGTGGCACGCGGATTAAGACCCGCAAACGAAATATCACATCATCGCTGGACCCTGCAGCATTTGCTGATGCAG
TGGTCCAGATTTATCTGGATAATGCTGGTGATTTGGAACTTGTAGCCAAGAGCATTGAATCTTCAGAACTCAACTTCTCAAGATACGGTGACACATTTTT
CGAGGTTGTTTTCACGGGAGGTCGTACTCAACCTGGAACAACTAAACCTGATGAGGGGGAGCGACATCCTTACTCTTTCCTAGATTGTGAGCCCAAGCAT
GAAGCTATATTACCTTCTGTGATTTATGTACAGAAGATCTTACGCCGGAGACCGTTTCTCATAAAGAACCTTGAAAATGTCATGCGGAGATTCCTGCAAT
CACTGAACTCTGTGAAGAAAGTGAAAGGAAGAAACTGGCAATTTTCTCAGCACTTGCATTCTCACAGAAACTATCAGGACTTCCACCGGAGTCTGTCTTG
CAACCATTGCTCAAGGATAATCTTGTGGCCAAAGGGATAG
AA sequence
>Lus10029666 pacid=23152149 polypeptide=Lus10029666 locus=Lus10029666.g ID=Lus10029666.BGIv1.0 annot-version=v1.0
MSSKEKPTLGGTRIKTRKRNITSSLDPAAFADAVVQIYLDNAGDLELVAKSIESSELNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHPYSFLDCEPKH
EAILPSVIYVQKILRRRPFLIKNLENVMRRFLQSLNSVKKVKGRNWQFSQHLHSHRNYQDFHRSLSCNHCSRIILWPKG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G36230 ARM repeat superfamily protein... Lus10029666
[exp]
0 1
AT1G20330 FRL1, CVP1, SMT... FRILL1, COTYLEDON VASCULAR PAT... Lus10023995
[exp]
6.4 0.8411
AT4G12420 SKU5 Cupredoxin superfamily protein... Lus10032241
[exp]
7.5 0.8192
AT5G55610 unknown protein Lus10016608
[exp]
9.5 0.7769
AT1G24160 unknown protein Lus10002952
[exp]
14.4 0.7728
AT4G32000 Protein kinase superfamily pro... Lus10041026
[exp]
17.5 0.7906
AT1G08500 AtENODL18 early nodulin-like protein 18 ... Lus10037998
[exp]
17.5 0.7662
AT5G43080 CYCA3;1 Cyclin A3;1 (.1) Lus10013886
[exp]
19.9 0.7842
AT4G31600 UDP-N-acetylglucosamine (UAA) ... Lus10020119
[exp]
26.5 0.7226
AT3G46060 ARA3, Ara-3, At... RAB GTPase homolog 8A (.1.2.3) Lus10005890
[exp]
26.9 0.6949
AT3G26700 Protein kinase superfamily pro... Lus10041509
[exp]
28.0 0.7807

Lus10029666 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.