Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52450 485 / 6e-170 MATE efflux family protein (.1) AT1G73700 466 / 2e-162 MATE efflux family protein (.1) AT2G34360 457 / 8e-159 MATE efflux family protein (.1) AT1G71140 374 / 3e-126 MATE efflux family protein (.1) AT1G15170 341 / 2e-113 MATE efflux family protein (.1) AT1G15150 336 / 3e-111 MATE efflux family protein (.1) AT1G66760 335 / 3e-111 MATE efflux family protein (.1.2) AT2G04080 330 / 2e-109 MATE efflux family protein (.1) AT1G15160 330 / 3e-109 MATE efflux family protein (.1) AT2G04070 326 / 1e-107 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041994 [exp] 578 / 0 AT5G52450 608 / 0.0 MATE efflux family protein (.1) Lus10017998 [exp] 526 / 0 AT5G52450 556 / 0.0 MATE efflux family protein (.1) Lus10001318 [exp] 404 / 4e-138 AT5G52450 507 / 1e-177 MATE efflux family protein (.1) Lus10019492 [exp] 395 / 1e-134 AT5G52450 485 / 6e-169 MATE efflux family protein (.1) Lus10017949 [exp] 371 / 4e-125 AT5G52450 402 / 2e-136 MATE efflux family protein (.1) Lus10000619 [exp] 351 / 1e-116 AT1G71140 528 / 0.0 MATE efflux family protein (.1) Lus10009132 [exp] 348 / 5e-116 AT2G04040 489 / 9e-171 detoxification 1, MATE efflux family protein (.1) Lus10018136 [exp] 343 / 5e-114 AT1G71140 571 / 0.0 MATE efflux family protein (.1) Lus10028540 [exp] 355 / 2e-113 AT1G15170 537 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G051900 [exp] 568 / 0 AT5G52450 644 / 0.0 MATE efflux family protein (.1) Potri.006G170900 [exp] 460 / 5e-160 AT5G52450 486 / 2e-169 MATE efflux family protein (.1) Potri.006G171240 [exp] 459 / 7e-160 AT5G52450 486 / 3e-169 MATE efflux family protein (.1) Potri.010G116700 [exp] 459 / 2e-159 AT5G52450 558 / 0.0 MATE efflux family protein (.1) Potri.010G116900 [exp] 385 / 1e-130 AT1G15170 598 / 0.0 MATE efflux family protein (.1) Potri.004G093400 [exp] 366 / 2e-123 AT1G71140 482 / 8e-168 MATE efflux family protein (.1) Potri.010G117000 [exp] 364 / 5e-122 AT1G15170 545 / 0.0 MATE efflux family protein (.1) Potri.017G120500 [exp] 361 / 3e-121 AT2G04100 468 / 3e-162 MATE efflux family protein (.1) Potri.008G126500 [exp] 357 / 1e-119 AT1G15170 546 / 0.0 MATE efflux family protein (.1) Potri.019G075800 [exp] 343 / 4e-115 AT1G71140 407 / 2e-139 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10029668 pacid=23152095 polypeptide=Lus10029668 locus=Lus10029668.g ID=Lus10029668.BGIv1.0 annot-version=v1.0 ATGGGAGGCAGAGAAACGACGCCTTCGATCGGGATGGAAACCTCGACGCCGACAGCGACGGAGAGAAGCGTGGTGGTGTTGGGAACTGCAAGCGCACTGG ACACATTCTGCGGGCAAGCCTACGGTGCAAAGCAGTACCGCACGATGACCATGCACACTCAACGAGCCTTGCTAGTAGTACTACTCCTCAGCATCCCCCT GGCCATCATATGGGCCAACACAGCCTCAATCCTGATCGCATTAGGACAACAAAAAGACATCTCCGACGGGGCCGGAGACTACGTCCGGTTCATGATCCCC AGTATTTTCGCCTACGGAATCCTACAGTGCCTCGTCAAGTTCCTCCAGACTCAAAGCATCGTTTACCCCATGGTGCTCTCCTCTGCCGCCGTGACTCTGC TCCACATCCTCCTTTGCTGGGCCCTCGTGTTTAAGCTCGGCACTGGACCCCGTGGCGCTGCCATTTCGGCCTCGGTGTCGACTTGGGTCAACGTCCTGCT CTTGTCTTTGTACGTCAAGTTCTCGCGGTCGTGTGCTGAGACTTGGACTGGGTTTTGTAAAGAGGCCTTCTCTAGATCTGACATTTGGAATTTCCTTAAG CTTGCTATTCCTTCCGCTTTCATGGTCTGCTTGGAATTGTGGTGCTTTGAGATGTTGGTTCTTGGTGCTGGCCTTCTTCCTAACCCGAAATTGGAGACAT CTGTTTTGTCAATATGCCTCAATACCGCTTTAACTCTGTGGATGATTCCCTATGGACTCGGCGCTGCCGCAAGCACAAGAGTGTCAAATGAATTGGGAGC AGGAAATCCAGAGCGGGCGCGTATGGCTGTACGCATAATAGTTGGGATGGTTGTTTGTGAAGGGATTTTGGTTGGTGGAATCTTGTTCTCAATACGCAGA GTTTGGGGAACTGTTTATAGCAACGACAAAGCCGTGATCAACTATGTAGCTCAGATGCTCCCTATTGCAGCTGTTGCTGGTTTTCTGGACGGCCTCCAGT GTGTTCTTTCAGGTACAGCTAGGGGTTGCGGTTACCAGAAGATTGGGGCATATATAAATTTGGGGTCTTATTATATAGTGGGAATTCCATGTGCAATCGT GTTTGCTTTCGTTCTTCACGTTGGTGGAAAGGGTCTGTATTTGGGGCTGATATGCGCTCTGGCGGTGCAAGCATTTTCGCTTTGTTTTATTACAATTCGT ACCAACTGGAAAGAAGAGGCCAAAAAGGCCAGTGAGAGGGTTTACTACACCACAATCCCAATAGAGCAAAGGTCATGA
AA sequence Show only first row Show all	>Lus10029668 pacid=23152095 polypeptide=Lus10029668 locus=Lus10029668.g ID=Lus10029668.BGIv1.0 annot-version=v1.0 MGGRETTPSIGMETSTPTATERSVVVLGTASALDTFCGQAYGAKQYRTMTMHTQRALLVVLLLSIPLAIIWANTASILIALGQQKDISDGAGDYVRFMIP SIFAYGILQCLVKFLQTQSIVYPMVLSSAAVTLLHILLCWALVFKLGTGPRGAAISASVSTWVNVLLLSLYVKFSRSCAETWTGFCKEAFSRSDIWNFLK LAIPSAFMVCLELWCFEMLVLGAGLLPNPKLETSVLSICLNTALTLWMIPYGLGAAASTRVSNELGAGNPERARMAVRIIVGMVVCEGILVGGILFSIRR VWGTVYSNDKAVINYVAQMLPIAAVAGFLDGLQCVLSGTARGCGYQKIGAYINLGSYYIVGIPCAIVFAFVLHVGGKGLYLGLICALAVQAFSLCFITIR TNWKEEAKKASERVYYTTIPIEQRS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52450			MATE efflux family protein (.1...		Lus10029668 [exp]	0	1
AT2G39450		ATMTP11	Cation efflux family protein (...		Lus10040318 [exp]	1.4	0.9226
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10007774 [exp]	2.4	0.9137
AT3G21670			Major facilitator superfamily ...		Lus10035317 [exp]	3.7	0.9218
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Lus10002979 [exp]	4.9	0.9201
AT5G49690			UDP-Glycosyltransferase superf...		Lus10028865 [exp]	5.5	0.9045
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Lus10039301 [exp]	5.9	0.9112
AT3G58070	C2H2ZnF	GIS	GLABROUS INFLORESCENCE STEMS, ...		Lus10016238 [exp]	6.0	0.9193
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Lus10021498 [exp]	7.9	0.9095
AT2G39450		ATMTP11	Cation efflux family protein (...		Lus10023439 [exp]	8.3	0.8666
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Lus10022599 [exp]	9.2	0.9015

Compare expression of checked genes

Lus10029668 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.