Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77590 1043 / 0 LACS9 long chain acyl-CoA synthetase 9 (.1) AT2G04350 895 / 0 LACS8 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) AT5G27600 354 / 4e-112 LACS7, ATLACS7 long-chain acyl-CoA synthetase 7 (.1) AT3G05970 344 / 2e-108 LACS6, ATLACS6 long-chain acyl-CoA synthetase 6 (.1) AT1G64400 306 / 2e-94 LACS3 long-chain acyl-CoA synthetase 3, AMP-dependent synthetase and ligase family protein (.1) AT4G23850 302 / 6e-93 LACS4 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) AT1G49430 301 / 2e-92 LRD2, LACS2 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) AT4G11030 300 / 4e-92 AMP-dependent synthetase and ligase family protein (.1) AT2G47240 297 / 5e-91 CER8, LACS1 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) AT3G23790 160 / 3e-41 AAE16 acyl activating enzyme 16, AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042707 [exp] 1334 / 0 AT1G77590 1082 / 0.0 long chain acyl-CoA synthetase 9 (.1) Lus10018178 [exp] 1197 / 0 AT1G77590 1076 / 0.0 long chain acyl-CoA synthetase 9 (.1) Lus10025657 [exp] 1187 / 0 AT1G77590 1067 / 0.0 long chain acyl-CoA synthetase 9 (.1) Lus10016083 [exp] 890 / 0 AT2G04350 1057 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10012307 [exp] 881 / 0 AT2G04350 1054 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10016085 [exp] 461 / 4e-156 AT2G04350 548 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10010530 [exp] 354 / 5e-112 AT5G27600 1095 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10004483 [exp] 352 / 2e-111 AT5G27600 1121 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10029918 [exp] 350 / 1e-110 AT5G27600 1122 / 0.0 long-chain acyl-CoA synthetase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G084100 [exp] 1134 / 0 AT1G77590 1079 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.005G177500 [exp] 1120 / 0 AT1G77590 1058 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.014G169400 [exp] 880 / 0 AT2G04350 1051 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.014G169600 [exp] 743 / 0 AT2G04350 866 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.013G021300 [exp] 347 / 1e-109 AT5G27600 1156 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Potri.010G090200 [exp] 330 / 3e-103 AT3G05970 1078 / 0.0 long-chain acyl-CoA synthetase 6 (.1) Potri.001G091900 [exp] 319 / 3e-99 AT4G23850 1101 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.003G139700 [exp] 310 / 1e-95 AT4G23850 1094 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.009G109900 [exp] 293 / 1e-89 AT1G49430 951 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Potri.002G192400 [exp] 293 / 2e-89 AT2G47240 950 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10029669 pacid=23152030 polypeptide=Lus10029669 locus=Lus10029669.g ID=Lus10029669.BGIv1.0 annot-version=v1.0 ATGAGCGTGTACGTGATCGGGGCAGTTGTCCCCCTGGTGGTGACCATTCTCCTCCGGAAGGACGGCGGCGGCAAGAAGCGCGGCGTCCCCATCGACGTCG GTGGTGAGCCAGGGTATGCGATTAGGAACTCTAAGTTCCCTACGCCGCTGGAGACGGCGTGGGAAGGGGTGTTCACGCTGGCGGAGCTGTTCGAGTACGC TTGCAAGAGGCATGGGGATAAGTGTTTGCTCGGTACCAGGAAGCTTATTTCTAGGGAGGTTGAAGTGAGTCCTGACGGGAGGTCGTTCGAGAAGCTTCAC TTGGGGGAATACGAGTGGCTCACTTACGCTGCCGTCTTTGCTAGGGTCTGCAATTTTGGTTCTGGCTTGGCTCATCTTGGGCATCAAAGGGATGAGCGAG TTGCCATATTTGCTGATACTCGAGCTGAGTGGTTCATTGCATTGCAGGGTTGCTTTAGGCGTAATGTTACGGTGGTTACCATCTATTCTTCTTTGGGGGA GGAAGCTCTTTGCCACTCATTGAATGAGACTGAAGTTACGACTGTGATTTGCGGGAGCAAGGAACTGAAGAAACTTGTCGACATAAATGGGCAACTCGAC ACTGTGAAACGGTTGATATGTATGGATGATGATATCCCTTCTGTTGCAATTCCACTGGAGCAGAGTGGGCGGTGGACGATTAATTCGCTTGCCAGTGTGG AGAAACTCGGCCAAGAAAATCCAACCGCTGCTACTTTGCCCCTGTCCGCTGATGTTGCTGTTATAATGTACACAAGTGGGAGTACTGGGTTGCCAAAGGG AGTAATGATGACACATGCTAATGTCCTGGCTGTAGTTTCTGCTGTCCGGACCATCGTTCCTCGCCTTGAGAACAAGGATGTTTATCTCGCATACCTTCCA TTAGCTCATATACTTGAAATAGCAGCTGAAAATATAATTGCCGGTGTGGGGAGTGCTATAGGGTATGGAAGTCCACTTACCCTTACCGACACTTCAAGCA AGATTAAAAGGGGGACTAAGGGAGACGCCACTGCGTTGAGTCCAACTGTGATGGCAGCTGTCCCAGCGATTCTTGATCGTGTTCGAGATGGCGTCCGAAA GAAGGTAGATGCAGAAGGTGGACTGTCCAAGTTTCTCTTTGACTTGGCATACAATCGTCGCTTGTCAGCAGTGAATGGGAGTTGGTTTGGTGCCTGGGGT CTAGAACTGCTTCTGTGGAACCTTCTTGTTTTTAAGAAGGTTCGAGCAGTTTTGGGAGGTAGAGTGCGCTTTTTGCTTTCTGGAGGTGCTCCTCTTTCGG GTGATACTCAAAGATTTATCAACATTTGCCTTGGGGCTCCAATTGGCCAAGGTTATGGTCTTACTGAGACTTGTGCTGGTGGGACGTTTTCTGAGTTCGA TGATACATCTGTTGCTCGTGTTGGTAATCCAGTTCCTTCCTCGTACATCAAGTTAGTAGATTGGCCAGAAGGTGGATACTTGATTAGCGATTCACCCAAG CCTCGTGGGGAAATAGTCATTGGTGGTCCTAACGTCACTCTTGGATACTTCAAAAATGAAGAAAAATCAAGAGAAGTCTACAAGGTTGACGAGAGGGGAA TGAGGTGGTTCTACACAGGTGACATTGGCCAGTTCCATGCTGACGGATGCCTTGAGATAATTGACCGCAAAAAGGATATAGTGAAGCTCCAACATGGGGA GTACGTCTCTTTAGGAAAGGTTGAGGCTGTTCTGAACGTTAGCCCATACGTCGACAACCTGATGTTGCACGCCGATCCATTCCACAGTTACTGCGTGGCT ATAATGGTGCCTTCACAGGCTTCCTTGGAAGAATGGGCAGCAAAGCAAGGAATAAGCTACTCGGATTTCTCGGATCTGTGTGACAAAATGGAAACCGTAA AGGAAGTGCAAGCTTCTCTTGTGAAGGAAGCGAAGAAGGCGAAGCTGGAGAAGTTTGAGATCCCGGCGAAGATAAAGCTTCTTTCGAATCCGTGGACTCC AGAGTCTGGACTAGTAACTGCAGCTTTAAAGATCAAGAGGGAAGCTATCAGGAAGACATTCTCTGAAGAGCTATCTAAGCTATATGAATGA
AA sequence Show only first row Show all	>Lus10029669 pacid=23152030 polypeptide=Lus10029669 locus=Lus10029669.g ID=Lus10029669.BGIv1.0 annot-version=v1.0 MSVYVIGAVVPLVVTILLRKDGGGKKRGVPIDVGGEPGYAIRNSKFPTPLETAWEGVFTLAELFEYACKRHGDKCLLGTRKLISREVEVSPDGRSFEKLH LGEYEWLTYAAVFARVCNFGSGLAHLGHQRDERVAIFADTRAEWFIALQGCFRRNVTVVTIYSSLGEEALCHSLNETEVTTVICGSKELKKLVDINGQLD TVKRLICMDDDIPSVAIPLEQSGRWTINSLASVEKLGQENPTAATLPLSADVAVIMYTSGSTGLPKGVMMTHANVLAVVSAVRTIVPRLENKDVYLAYLP LAHILEIAAENIIAGVGSAIGYGSPLTLTDTSSKIKRGTKGDATALSPTVMAAVPAILDRVRDGVRKKVDAEGGLSKFLFDLAYNRRLSAVNGSWFGAWG LELLLWNLLVFKKVRAVLGGRVRFLLSGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGGTFSEFDDTSVARVGNPVPSSYIKLVDWPEGGYLISDSPK PRGEIVIGGPNVTLGYFKNEEKSREVYKVDERGMRWFYTGDIGQFHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAVLNVSPYVDNLMLHADPFHSYCVA IMVPSQASLEEWAAKQGISYSDFSDLCDKMETVKEVQASLVKEAKKAKLEKFEIPAKIKLLSNPWTPESGLVTAALKIKREAIRKTFSEELSKLYE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10029669 [exp]	0	1
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Lus10034458 [exp]	1.0	0.9057
AT3G19740			P-loop containing nucleoside t...		Lus10017405 [exp]	6.5	0.8796
AT2G38550			Transmembrane proteins 14C (.1...		Lus10025221 [exp]	8.0	0.8889
AT2G28000		Cpn60alpha1, SL...	SCHLEPPERLESS, chaperonin-60al...		Lus10041329 [exp]	8.4	0.8839
AT4G34110		PABP2, PAB2, AT...	ARABIDOPSIS POLY\(A\) BINDING ...		Lus10010042 [exp]	9.3	0.8326
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10040883 [exp]	11.2	0.8855
AT5G52920		PKP-BETA1, PKP2...	PLASTIDIAL PYRUVATE KINASE 2, ...		Lus10039316 [exp]	11.4	0.8805
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Lus10012261 [exp]	11.7	0.9038
AT5G62170			unknown protein		Lus10027402 [exp]	12.3	0.8739
AT2G44640			unknown protein		Lus10043347 [exp]	13.0	0.8913

Compare expression of checked genes

Lus10029669 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.