Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18430 277 / 1e-96 Calcium-binding EF-hand family protein (.1.2) AT3G51920 63 / 7e-13 CML9, CAM9, ATCML9 CALMODULIN LIKE PROTEIN 9, calmodulin 9 (.1) AT3G22930 62 / 2e-12 CML11 calmodulin-like 11 (.1) AT4G14640 58 / 6e-11 CAM8, AtCML8 calmodulin-like 8, calmodulin 8 (.1) AT2G41110 49 / 2e-07 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2) AT2G27030 49 / 2e-07 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT3G56800 49 / 2e-07 ACAM-3, CAM3 calmodulin 3 (.1) AT4G37010 42 / 5e-05 CEN2 centrin 2 (.1.2) AT2G41090 42 / 6e-05 Calcium-binding EF-hand family protein (.1) AT5G37770 40 / 0.0002 CML24, TCH2 TOUCH 2, CALMODULIN-LIKE 24, EF hand calcium-binding protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042708 [exp] 341 / 8e-122 AT3G18430 271 / 4e-94 Calcium-binding EF-hand family protein (.1.2) Lus10010775 [exp] 268 / 6e-93 AT3G18430 273 / 6e-95 Calcium-binding EF-hand family protein (.1.2) Lus10022173 [exp] 243 / 1e-83 AT3G18430 257 / 6e-89 Calcium-binding EF-hand family protein (.1.2) Lus10039391 [exp] 64 / 3e-13 AT4G14640 268 / 1e-93 calmodulin-like 8, calmodulin 8 (.1) Lus10001775 [exp] 53 / 4e-09 AT2G27030 192 / 1e-63 calmodulin 5 (.1.2.3) Lus10024830 [exp] 50 / 4e-08 AT4G14640 176 / 2e-57 calmodulin-like 8, calmodulin 8 (.1) Lus10041179 [exp] 43 / 8e-06 AT4G14640 174 / 2e-57 calmodulin-like 8, calmodulin 8 (.1) Lus10011028 [exp] 40 / 0.0004 AT4G17615 359 / 5e-128 SOS3-LIKE CALCIUM BINDING PROTEIN 5, ARABIDOPSIS THALIANA CALCINEURIN B-LIKE PROTEIN, calcineurin B-like protein 1 (.1.2) Lus10004330 [exp] 39 / 0.0005 AT1G24620 207 / 2e-69 EF hand calcium-binding protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G030300 [exp] 299 / 3e-105 AT3G18430 295 / 6e-104 Calcium-binding EF-hand family protein (.1.2) Potri.018G103600 [exp] 258 / 3e-89 AT3G18430 264 / 2e-91 Calcium-binding EF-hand family protein (.1.2) Potri.008G159300 [exp] 63 / 6e-13 AT3G22930 235 / 1e-80 calmodulin-like 11 (.1) Potri.010G080900 [exp] 61 / 7e-12 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.005G215700 [exp] 50 / 5e-08 AT3G22930 200 / 8e-67 calmodulin-like 11 (.1) Potri.001G138000 [exp] 41 / 8e-05 AT3G03000 221 / 8e-75 EF hand calcium-binding protein family (.1) Potri.003G095700 [exp] 40 / 0.0003 AT3G03000 220 / 1e-74 EF hand calcium-binding protein family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029670 pacid=23152089 polypeptide=Lus10029670 locus=Lus10029670.g ID=Lus10029670.BGIv1.0 annot-version=v1.0 ATGGGGAGTGCCTTGTCTATGCTAACTCAATATGACATAGAAGAAGTTGAGGAGCACTGTCACCATATATTCTCCCAGCAGGAAATTGTGTCCTTGTATA AGAGATTCTGTCAGCTAGATCGAAATGCGAAAGGATTCATCTCAGCAGACGAGTTCTTATCGGTGCCCGAGTTTGCTATGAATCCCCTTTCTCAGCGGCT GGTTAATATAGTGGATGGCTTGAACTTCAAGGACTTTGTAGCATTCTTATCTTCATTCAGTTCTAAAGCAACCAACGAGCAGAAAATAGCTTTGATATTT AAAGTATATGACCCAGATGGAAATGGGAAAGTGTCTTTCAAGGACATTTTAAGGGTACTTGCTGATATGTCTGGTTCATTCATGTCAGCTGAGGAAAGAG AGCAAATACTTACCGAGGTTATAAAGGAAGCAGGTTACTCAAAGGAAGGTTACCTATTGCTAGATGACTTCATCAAGGTATTTGGGAGTTCAGGCTTAAA AATGGAAGTTGAAGTTCCAGTTGATTAA
AA sequence Show only first row Show all	>Lus10029670 pacid=23152089 polypeptide=Lus10029670 locus=Lus10029670.g ID=Lus10029670.BGIv1.0 annot-version=v1.0 MGSALSMLTQYDIEEVEEHCHHIFSQQEIVSLYKRFCQLDRNAKGFISADEFLSVPEFAMNPLSQRLVNIVDGLNFKDFVAFLSSFSSKATNEQKIALIF KVYDPDGNGKVSFKDILRVLADMSGSFMSAEEREQILTEVIKEAGYSKEGYLLLDDFIKVFGSSGLKMEVEVPVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18430			Calcium-binding EF-hand family...		Lus10029670 [exp]	0	1
AT2G36800		UGT73C5, DOGT1	UDP-GLUCOSYL TRANSFERASE 73C5,...		Lus10003323 [exp]	1.7	0.9465
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10042788 [exp]	2.0	0.9251
AT3G57680			Peptidase S41 family protein (...		Lus10040494 [exp]	3.7	0.8916
AT3G45740			hydrolase family protein / HAD...		Lus10023480 [exp]	5.7	0.8792
AT1G79960	OFP	ATOFP14, OFP14	ovate family protein 14 (.1)		Lus10035891 [exp]	6.0	0.8587
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Lus10006249 [exp]	7.5	0.9123
AT3G24420			alpha/beta-Hydrolases superfam...		Lus10017735 [exp]	9.3	0.9173
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10023210 [exp]	11.2	0.9088
AT5G45170			Haloacid dehalogenase-like hyd...		Lus10018280 [exp]	12.8	0.8811
AT1G52510			alpha/beta-Hydrolases superfam...		Lus10035875 [exp]	14.3	0.8988

Compare expression of checked genes

Lus10029670 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.