Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49410 359 / 5e-120 Transcription factor IIIC, subunit 5 (.1) AT5G24450 357 / 2e-119 Transcription factor IIIC, subunit 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042710 [exp] 679 / 0 AT3G49410 396 / 2e-134 Transcription factor IIIC, subunit 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G007200 [exp] 424 / 1e-145 AT5G24450 533 / 0.0 Transcription factor IIIC, subunit 5 (.1) Potri.007G145000 [exp] 387 / 4e-132 AT5G24450 461 / 1e-158 Transcription factor IIIC, subunit 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF09734 [flax] [poplar] Tau95 RNA polymerase III transcription factor (TF)IIIC subunit HTH domain
Representative CDS sequence Show only first row Show all	>Lus10029672 pacid=23152067 polypeptide=Lus10029672 locus=Lus10029672.g ID=Lus10029672.BGIv1.0 annot-version=v1.0 ATGGGGGTGATCGAAGATGGAAAAGTAGAAGGAACACTACCCAGCAGTGAGGTCTTTGCTGTACAATACCCTGGCTATCCTTCCTCAATTCCTCGCGCTA TCCAAACTCTTGGTGGAACTAAAGCAATTGCCAAGGCTCGAGCTTCGAAATCAAACAATCTGGAGCTCCACTTTCGCCCAGAAGATCCATACTCTCGTCC TATTTCAGGGCAGCTCTGTCCCTGTAACGGCTTGCTGCTCAGAATTGTCAAAAACCAACCTTCCTCCCAGAATGCAAATAATTCTCCTACTACTAGTACT GATAAGGGTAGGAGTGGAGTTGAAGATGATGAAAAAGTTTCTGCTGAGATTGTTGGCCGGGTCACCGAAGCTTATCGCTTTGAAGGAATGGCGGATTACC AACATGTAGTTGCTGTACATGCTGATGTGGCTCGCAGAAAAAAGAGGAACTGGACTGAAATGAATAAGCCACATTTTGAAACGGCTGGTCTCATGGATTT AGATCAAGAGGATGTCATGATTTTGCCGCCACCTTCTTTTTCAGCCAAAGATACCCCCACTTGTGCATTTCTCAGGTTGAGACCAACAAGCACTACAAGC TCAAAGAAGAAACCGGAAGAAGCAGTTGAAAACTATATGGAGTTCTACTTAGCAGCCTTACAGATACCCAAGAAATTAAACTGGAAAGAATTCGCACCTC CAAACTCGGTGATGCATGAGTGGCTGATGGCTTTATCTGAGTTGTTTGAGGAGCGACCTATATGGCCTAAGGAGTCTCTGGTCCAGCGCTTACGTGAAAA GGATCTACATTTTAATCATCAAACACTCAAGAGGCTATTAGTACTGGTCGCTTACTACTTTTTAGGTGGGCCGTACCGCATGTTTTGGATCCAAAAAGGT TATGATCCTCGCCATGATCCTGAATCTCGAATCTACCAAAGAATGGATTTACGAGTTCCACCTGCATTAAGGAGTTATTGTGATTCTAATGCTGCTAAAG GCTTAAAACACAAATGGGAGGACTTATGCAAGTTTGAAGCTTTTCCTTACAAATGTCATATATCGTTGCAACTCTTTGAACTTGTTGATGATTATATTCA AGAAGAGATAAAGAAACCATCCAAGCAGACTACTTGTACTGTGAGTTAG
AA sequence Show only first row Show all	>Lus10029672 pacid=23152067 polypeptide=Lus10029672 locus=Lus10029672.g ID=Lus10029672.BGIv1.0 annot-version=v1.0 MGVIEDGKVEGTLPSSEVFAVQYPGYPSSIPRAIQTLGGTKAIAKARASKSNNLELHFRPEDPYSRPISGQLCPCNGLLLRIVKNQPSSQNANNSPTTST DKGRSGVEDDEKVSAEIVGRVTEAYRFEGMADYQHVVAVHADVARRKKRNWTEMNKPHFETAGLMDLDQEDVMILPPPSFSAKDTPTCAFLRLRPTSTTS SKKKPEEAVENYMEFYLAALQIPKKLNWKEFAPPNSVMHEWLMALSELFEERPIWPKESLVQRLREKDLHFNHQTLKRLLVLVAYYFLGGPYRMFWIQKG YDPRHDPESRIYQRMDLRVPPALRSYCDSNAAKGLKHKWEDLCKFEAFPYKCHISLQLFELVDDYIQEEIKKPSKQTTCTVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49410			Transcription factor IIIC, sub...		Lus10029672 [exp]	0	1
AT3G49410			Transcription factor IIIC, sub...		Lus10042710 [exp]	2.8	0.8768
AT4G01860			Transducin family protein / WD...		Lus10038045 [exp]	8.4	0.8627
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Lus10033690 [exp]	11.7	0.8582
AT2G03150		EMB1579	embryo defective 1579, ATP/GTP...		Lus10030445 [exp]	14.5	0.8504
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10003491 [exp]	15.2	0.8467
AT1G42440			unknown protein		Lus10013232 [exp]	16.0	0.8519
AT3G04820			Pseudouridine synthase family ...		Lus10015931 [exp]	16.2	0.8325
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Lus10027599 [exp]	16.7	0.8532
AT3G09180			unknown protein		Lus10021276 [exp]	17.8	0.7721
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Lus10020235 [exp]	18.2	0.8394

Compare expression of checked genes

Lus10029672 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.