Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02240 157 / 1e-46 MEE66 maternal effect embryo arrest 66, F-box family protein (.1) AT5G24560 150 / 1e-44 ATPP2-B12 phloem protein 2-B12 (.1) AT2G02360 145 / 2e-42 ATPP2-B10 phloem protein 2-B10 (.1) AT2G02340 143 / 4e-41 ATPP2-B8 phloem protein 2-B8 (.1) AT2G02250 135 / 7e-38 ATPP2-B2 phloem protein 2-B2 (.1) AT2G02230 135 / 8e-38 ATPP2-B1 phloem protein 2-B1 (.1) AT1G80110 129 / 5e-36 ATPP2-B11 phloem protein 2-B11 (.1) AT2G02310 114 / 5e-30 ATPP2-B6 phloem protein 2-B6 (.1) AT2G02320 109 / 5e-28 ATPP2-B7 phloem protein 2-B7 (.1) AT2G02300 105 / 1e-26 ATPP2-B5 phloem protein 2-B5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042712 [exp] 428 / 2e-153 AT2G02230 179 / 6e-55 phloem protein 2-B1 (.1) Lus10018171 [exp] 154 / 7e-45 AT2G02240 219 / 2e-69 maternal effect embryo arrest 66, F-box family protein (.1) Lus10025666 [exp] 149 / 4e-43 AT5G24560 219 / 5e-69 phloem protein 2-B12 (.1) Lus10042713 [exp] 144 / 4e-41 AT2G02230 235 / 1e-75 phloem protein 2-B1 (.1) Lus10029674 [exp] 139 / 2e-39 AT2G02230 237 / 2e-76 phloem protein 2-B1 (.1) Lus10023207 [exp] 139 / 2e-39 AT2G02240 213 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Lus10008898 [exp] 136 / 1e-38 AT5G24560 212 / 3e-68 phloem protein 2-B12 (.1) Lus10025660 [exp] 124 / 4e-34 AT2G02360 183 / 9e-57 phloem protein 2-B10 (.1) Lus10025661 [exp] 121 / 9e-33 AT2G02340 109 / 7e-28 phloem protein 2-B8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G267000 [exp] 162 / 3e-48 AT2G02240 239 / 1e-77 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G015800 [exp] 157 / 2e-46 AT2G02240 242 / 1e-78 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G016100 [exp] 148 / 3e-43 AT2G02250 217 / 2e-69 phloem protein 2-B2 (.1) Potri.001G050100 [exp] 145 / 4e-42 AT2G02360 219 / 5e-71 phloem protein 2-B10 (.1) Potri.006G266900 [exp] 142 / 1e-40 AT2G02240 215 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G016000 [exp] 140 / 7e-40 AT2G02250 220 / 2e-70 phloem protein 2-B2 (.1) Potri.005G022000 [exp] 130 / 2e-36 AT1G09155 290 / 4e-98 phloem protein 2-B15 (.1) Potri.013G012600 [exp] 108 / 6e-28 AT1G09155 281 / 1e-94 phloem protein 2-B15 (.1) Potri.001G109800 [exp] 80 / 3e-17 AT1G12710 408 / 1e-144 phloem protein 2-A12 (.1) Potri.003G121900 [exp] 78 / 1e-16 AT1G12710 401 / 9e-142 phloem protein 2-A12 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029673 pacid=23151949 polypeptide=Lus10029673 locus=Lus10029673.g ID=Lus10029673.BGIv1.0 annot-version=v1.0 ATGGAGGAGCTGCCAGAGAACTGCATAATGAAAATATTAACCTTCGCAGGTCCCCAGGAGTCATGCAGGCTTGCTATCCTCTCCACCATTTTCAAATCAG CTTCCCATTTCGACGGTCTCTGGGAATCCTTCCTCCCACCGGACTACCAAACCCTCATCTCCCATTCCTCCAATCCTTCCAAGCGACACCTCGTCATCAC CCTCTGCCACCACCCAATCCTCATCCGAAACGCCACAATGAGTCTGATGCTGGACAAACGTACCGGGAAGAATATAGTGACGATTGGGGCCACGGAGCTT TCAATCGCATGGGGGAACAATCCGGACTACTGGCAATTGAGGAGCGACGATCCGGATTCCATGTTCCCTCAAGTCGCGGAGCTTTTGAAAGTTTGCTGGT TTGAGATTTCAGCAAGGCTGGACATGATGAGCAGCCGTACGTCGACCTTGTTGTCCCCGAAGACCTTCTACGCTGCCTACTTTGTGTTCAAGATGACGAG CGGGGCGGCGTCAGGGTTCGCGAACCGACCGGTGGAGGCTGAGGTGAGGGTTTCTGGAAGTGTTGTCAGCCATGGAGTGATATTTCTGGAAGGCGAAGGT GGCGACGGGCGGCCGAGGAAGAGAGGAGACGGTTGGTGCGAGGTGAAGATTGGAGAGTTCTGGACGCCACCGCCGGCGGAAGAGGAGGAGGAGGAGGAGC AATGGTTGGATTTGAAGTTGCTGAATCGTACGGGTAATTGGAAGAAGGGTGTTACTGTTCAGGGAATTGAATTCAGGCCTTGTTAA
AA sequence Show only first row Show all	>Lus10029673 pacid=23151949 polypeptide=Lus10029673 locus=Lus10029673.g ID=Lus10029673.BGIv1.0 annot-version=v1.0 MEELPENCIMKILTFAGPQESCRLAILSTIFKSASHFDGLWESFLPPDYQTLISHSSNPSKRHLVITLCHHPILIRNATMSLMLDKRTGKNIVTIGATEL SIAWGNNPDYWQLRSDDPDSMFPQVAELLKVCWFEISARLDMMSSRTSTLLSPKTFYAAYFVFKMTSGAASGFANRPVEAEVRVSGSVVSHGVIFLEGEG GDGRPRKRGDGWCEVKIGEFWTPPPAEEEEEEEQWLDLKLLNRTGNWKKGVTVQGIEFRPC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02230		ATPP2-B1	phloem protein 2-B1 (.1)		Lus10029673 [exp]	0	1
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10037217 [exp]	3.9	0.9002
AT2G02230		ATPP2-B1	phloem protein 2-B1 (.1)		Lus10042712 [exp]	8.1	0.8865
AT4G02940			oxidoreductase, 2OG-Fe(II) oxy...		Lus10008166 [exp]	8.4	0.7971
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Lus10008946 [exp]	10.9	0.8956
AT3G10680			HSP20-like chaperones superfam...		Lus10033409 [exp]	18.4	0.8542
AT5G03795			Exostosin family protein (.1)		Lus10016058 [exp]	19.7	0.8718
AT1G29380			Carbohydrate-binding X8 domain...		Lus10004600 [exp]	20.4	0.8723
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Lus10020791 [exp]	21.8	0.7718
AT3G07420		ATNS2, SYNC2_AR...	SYNTHETASE C2, asparaginyl-tRN...		Lus10025874 [exp]	22.4	0.8690
AT4G18340			Glycosyl hydrolase superfamily...		Lus10028122 [exp]	23.5	0.8683

Compare expression of checked genes

Lus10029673 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.