Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02230 204 / 9e-64 ATPP2-B1 phloem protein 2-B1 (.1) AT2G02240 200 / 3e-62 MEE66 maternal effect embryo arrest 66, F-box family protein (.1) AT5G24560 195 / 3e-61 ATPP2-B12 phloem protein 2-B12 (.1) AT2G02360 191 / 1e-59 ATPP2-B10 phloem protein 2-B10 (.1) AT2G02250 189 / 5e-58 ATPP2-B2 phloem protein 2-B2 (.1) AT1G80110 181 / 1e-55 ATPP2-B11 phloem protein 2-B11 (.1) AT1G09155 179 / 2e-54 ATPP2-B15 phloem protein 2-B15 (.1) AT2G02340 174 / 2e-52 ATPP2-B8 phloem protein 2-B8 (.1) AT1G56240 167 / 6e-50 ATPP2-B13 phloem protein 2-B13 (.1) AT1G56250 167 / 8e-50 ATPP2-B14 phloem protein 2-B14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042713 [exp] 491 / 5e-177 AT2G02230 235 / 1e-75 phloem protein 2-B1 (.1) Lus10018171 [exp] 337 / 2e-115 AT2G02240 219 / 2e-69 maternal effect embryo arrest 66, F-box family protein (.1) Lus10025666 [exp] 330 / 7e-113 AT5G24560 219 / 5e-69 phloem protein 2-B12 (.1) Lus10020674 [exp] 199 / 2e-62 AT1G09155 266 / 7e-89 phloem protein 2-B15 (.1) Lus10008898 [exp] 199 / 3e-62 AT5G24560 212 / 3e-68 phloem protein 2-B12 (.1) Lus10029872 [exp] 196 / 4e-61 AT1G09155 272 / 3e-91 phloem protein 2-B15 (.1) Lus10023207 [exp] 194 / 2e-60 AT2G02240 213 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Lus10020673 [exp] 184 / 1e-56 AT1G09155 272 / 2e-91 phloem protein 2-B15 (.1) Lus10015208 [exp] 181 / 4e-55 AT1G09155 270 / 2e-90 phloem protein 2-B15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G015800 [exp] 288 / 9e-97 AT2G02240 242 / 1e-78 maternal effect embryo arrest 66, F-box family protein (.1) Potri.006G267000 [exp] 280 / 1e-93 AT2G02240 239 / 1e-77 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G016000 [exp] 222 / 4e-71 AT2G02250 220 / 2e-70 phloem protein 2-B2 (.1) Potri.006G266900 [exp] 221 / 1e-70 AT2G02240 215 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Potri.005G022000 [exp] 211 / 9e-67 AT1G09155 290 / 4e-98 phloem protein 2-B15 (.1) Potri.018G016100 [exp] 198 / 6e-62 AT2G02250 217 / 2e-69 phloem protein 2-B2 (.1) Potri.013G012600 [exp] 195 / 7e-61 AT1G09155 281 / 1e-94 phloem protein 2-B15 (.1) Potri.001G050100 [exp] 182 / 3e-56 AT2G02360 219 / 5e-71 phloem protein 2-B10 (.1) Potri.013G012666 [exp] 94 / 3e-23 AT1G09155 120 / 2e-33 phloem protein 2-B15 (.1) Potri.012G120400 [exp] 92 / 1e-21 AT4G19840 233 / 1e-76 phloem protein 2-A1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029674 pacid=23152016 polypeptide=Lus10029674 locus=Lus10029674.g ID=Lus10029674.BGIv1.0 annot-version=v1.0 ATGGACACAATCAAATCCTCGCCGCCGCCCGGTATGAACGACCTCCCGGAAGACCTGATCGCCAACGTCCTATCCTTTACCAGTCCTCGGGAATCTTGCT GCTTGGCCCTGGTTTCATCCAGTTTTTGGTCTGCTTCGATCTCCGACGCCGTCTGGGAGCGATTTCTGCCTCCCGATTATCTCAATCTCCTTTCCTCCTC TGTTTCTAATCCCAGCTGGAGTTCCAAGAAGGATCTCTTCCGCTGCCTCTGTCATACCCCTCTTCTCATCGATGGCGGCAAAAGGAGCTTTTCGTTGGAG AAGCGGAGCGGGAAGAAATGCTACATGATCTCATCAAGGGATCTCGACATTGTATGGGGCGATACTCCTAGATATTGGAAATGGATCCCCGACCCTGATT CAAGATTTGGGGAAGTTGCTGAGCTGGTGGGGGTATGTTGGTTGGAGGTGAAGGGAACAATTGCAACAACAATGTTGTCCCCTGCTACATTGTACACAGC TTTCTTGGTGTTCAAGTCTCCCCTTGGAGCCTACGGATTCGACCACCAGCCTGTCGAAGTTTCGGTGGGGCTGGCCGGGTGCGAGAAGAGCTTCGTTCCT GCTTTCCTTGATGCAGGAATTGAGAGGAGGAGGAGGCTCCAGCTGGTGACCATTCCCAGGAGGGTAGCTGAGTTTGCACGCCGAGTCACGACCGGGTTTA ACAACCCGCCAGAAGAAATTATCAACGGAGGTACTAGTGAGGATGGAGGGCTGTATCCCAAGGAGAGAAGAGATGGGTGGTTCGAAGTCGAGCTGGGGGA GTTCTTTACAAAGGAAGGTGAAGAAGGGGAGTTGGAGATTTGTATTTATGAGGTGAAAGGTGGGAATTGGAAAGGTGGCCTTCTTGTTCAAGGCATTGAG ATCAGGCCAAAACAAAGTAAATAG
AA sequence Show only first row Show all	>Lus10029674 pacid=23152016 polypeptide=Lus10029674 locus=Lus10029674.g ID=Lus10029674.BGIv1.0 annot-version=v1.0 MDTIKSSPPPGMNDLPEDLIANVLSFTSPRESCCLALVSSSFWSASISDAVWERFLPPDYLNLLSSSVSNPSWSSKKDLFRCLCHTPLLIDGGKRSFSLE KRSGKKCYMISSRDLDIVWGDTPRYWKWIPDPDSRFGEVAELVGVCWLEVKGTIATTMLSPATLYTAFLVFKSPLGAYGFDHQPVEVSVGLAGCEKSFVP AFLDAGIERRRRLQLVTIPRRVAEFARRVTTGFNNPPEEIINGGTSEDGGLYPKERRDGWFEVELGEFFTKEGEEGELEICIYEVKGGNWKGGLLVQGIE IRPKQSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02230		ATPP2-B1	phloem protein 2-B1 (.1)		Lus10029674 [exp]	0	1
AT5G24560		ATPP2-B12	phloem protein 2-B12 (.1)		Lus10025666 [exp]	1.0	0.8506
					Lus10009611 [exp]	4.0	0.7783
AT2G22500		UCP5, ATPUMP5, ...	DICARBOXYLATE CARRIER 1, PLANT...		Lus10025725 [exp]	5.7	0.8095
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10032188 [exp]	5.8	0.8273
AT2G26520			unknown protein		Lus10020993 [exp]	6.3	0.7933
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10015178 [exp]	6.5	0.8255
AT3G53970			proteasome inhibitor-related (...		Lus10035223 [exp]	6.6	0.7386
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10013952 [exp]	7.5	0.8099
AT5G63450		CYP94B1	"cytochrome P450, family 94, s...		Lus10014741 [exp]	7.9	0.7942
AT5G51040			unknown protein		Lus10043024 [exp]	8.4	0.8169

Compare expression of checked genes

Lus10029674 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.