Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69740 601 / 0 HEMB1 Aldolase superfamily protein (.1.2) AT1G44318 470 / 4e-165 HEMB2 Aldolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042716 [exp] 646 / 0 AT1G69740 644 / 0.0 Aldolase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G082300 [exp] 627 / 0 AT1G69740 648 / 0.0 Aldolase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00490 [flax] [poplar] ALAD Delta-aminolevulinic acid dehydratase
Representative CDS sequence Show only first row Show all	>Lus10029675 pacid=23152134 polypeptide=Lus10029675 locus=Lus10029675.g ID=Lus10029675.BGIv1.0 annot-version=v1.0 ATGGCTTCTACGATATTCCACGCTCCTTCTGTTATACCTGTCGTCAAAGGCTTGGATTGCAACGGCTACAAACCTACGCTGGGTAGTTTGAGGTTTGGCA TCTCTAATAAGAAGTCGATCGCCGTTTCTCATCCTCCGAAGCGACAGTTTACGGCCTATGCAACCAGCGATATCCCTGTCAAGACTGGGTTGAGCGATGC GGAGTGTGAAGCTGCTGTTGCGGCAGGGAAAGTACCTGAGGCGCCTCCTGTCCCGCCGACCCCCGCTGCTCCCGCCGGAACTCCCGTCGTTACTTCGCTC CCACTTTCTCGACGCCCTCGTCGTAATCGACGATCACCTGCTTTGAGAGCAGCATTTCAGGAAACCACTATTTCACCTGCGAATTTGGTGTATCCACTTT TCATTCACGAAGGTGAGGAGGATACTCCTATTGGGGCAATGCCTGGATGTTACAGGCTTGGATGGAGACATGGACTTTTGGAAGAGGTAGCAAAGGCCCG GGATGTTGGTGTGAACAGTATTGTACTCTTCCCCAAAGTTCCCGATGCTGTGAAGTCCCCTACTGGAGATGAAGCTTACAATGAGGATGGCCTAGTTCCG AGGACCATACGGCTGCTAAAGGACAGATTCCCTGATCTTGTTATATACACTGATGTTGCTCTGGATCCATATTCCTCTGATGGGCATGATGGTATCGTTA GAGAAGACGGAGTCATAATGAATGATGAGACAGTGCACCAACTATGCAAGCAAGCCGTTGCTCAGGCTCGGGCTGGAGCTGATGTTGTTAGTCCTAGTGA CATGATGGATGGTCGCGTGGGAGCTATTCGTGATGCTCTTGATGAGGCAGGGTTTCAGCATGTTCTTATCATGTCCTATACAGCAAAGTATGCTAGTTCG TTCTATGGACCATTCAGGGAAGCACTGGACTCAAATCCACGTTTTGGGGATAAAAAGACCTATCAGATGAATCCTGCAAATTATAGAGAGGCTTTGATCG AGGTCCACGAAGATGAATCTGAAGGAGCTGACATCCTCCTGGTAAAACCTGGTCTTCCATACTTGGATATCATCAGGCAACTGAGGGACAATTCTCCTTT GCCGATTGCCGCGTATCAGGTTTCAGGAGAGTACTCAATGATAAAGGCAGGTGGGATCCTGAAAATGATAGATGAAGAAAAGGTGATGATGGAGTCACTG TTGTGTTTGAGAAGGGCAGGTGCTGATATCATCCTCACCTATTTTGCTCTGCAAGCTGCTAGATCCATGTGTGGTGAAAAGAGGTAA
AA sequence Show only first row Show all	>Lus10029675 pacid=23152134 polypeptide=Lus10029675 locus=Lus10029675.g ID=Lus10029675.BGIv1.0 annot-version=v1.0 MASTIFHAPSVIPVVKGLDCNGYKPTLGSLRFGISNKKSIAVSHPPKRQFTAYATSDIPVKTGLSDAECEAAVAAGKVPEAPPVPPTPAAPAGTPVVTSL PLSRRPRRNRRSPALRAAFQETTISPANLVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLLEEVAKARDVGVNSIVLFPKVPDAVKSPTGDEAYNEDGLVP RTIRLLKDRFPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVAQARAGADVVSPSDMMDGRVGAIRDALDEAGFQHVLIMSYTAKYASS FYGPFREALDSNPRFGDKKTYQMNPANYREALIEVHEDESEGADILLVKPGLPYLDIIRQLRDNSPLPIAAYQVSGEYSMIKAGGILKMIDEEKVMMESL LCLRRAGADIILTYFALQAARSMCGEKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69740		HEMB1	Aldolase superfamily protein (...		Lus10029675 [exp]	0	1
AT1G60550		ECHID, DHNS	enoyl-CoA hydratase/isomerase ...		Lus10013023 [exp]	12.0	0.8122
AT1G06510			unknown protein		Lus10031459 [exp]	14.7	0.7424
AT1G11430			plastid developmental protein ...		Lus10018398 [exp]	18.2	0.7989
AT1G58290		AtHEMA1, HEMA1	Arabidopsis thaliana hemA 1, G...		Lus10028226 [exp]	34.5	0.7612
AT5G24650			Mitochondrial import inner mem...		Lus10032959 [exp]	35.1	0.7240
AT5G66550			Maf-like protein (.1)		Lus10040204 [exp]	57.6	0.7077
AT5G08520	MYB		Duplicated homeodomain-like su...		Lus10013447 [exp]	80.4	0.7041
AT5G08520	MYB		Duplicated homeodomain-like su...		Lus10041001 [exp]	84.0	0.6766
AT3G24800		PRT1	proteolysis 1 (.1)		Lus10025930 [exp]	94.7	0.6925
AT1G70780			unknown protein		Lus10035084 [exp]	97.9	0.6617

Compare expression of checked genes

Lus10029675 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.