Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21760 445 / 2e-156 ATFBP7 F-box protein 7 (.1) AT4G33210 42 / 0.0007 SLOMO SLOW MOTION, F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042716 [exp] 603 / 0 AT1G69740 644 / 0.0 Aldolase superfamily protein (.1.2) Lus10042637 [exp] 40 / 0.001 AT4G24210 186 / 6e-61 SLEEPY1, F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G082500 [exp] 486 / 1e-172 AT1G21760 474 / 7e-170 F-box protein 7 (.1) Potri.005G178600 [exp] 481 / 6e-171 AT1G21760 479 / 6e-172 F-box protein 7 (.1) Potri.006G220900 [exp] 47 / 2e-05 AT4G33210 1183 / 0.0 SLOW MOTION, F-box family protein (.1) Potri.014G022100 [exp] 43 / 0.0001 AT4G24210 182 / 1e-59 SLEEPY1, F-box family protein (.1) Potri.002G122300 [exp] 42 / 0.0002 AT4G24210 185 / 2e-60 SLEEPY1, F-box family protein (.1) Potri.017G092800 [exp] 41 / 0.0008 AT5G39250 334 / 7e-117 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10029676 pacid=23151993 polypeptide=Lus10029676 locus=Lus10029676.g ID=Lus10029676.BGIv1.0 annot-version=v1.0 ATGGAGGAAGATGCTTTGTTTTTTTTAGATATCGCCGTACAAGTTCCCGCAGAGCTGGAATCGGCTTTGCAGTTGAAGACTGTGCGCTATTTTGTCACTC AGAGGCCATGGCTCGATCTTTATGGTGTTCATGTACGCCCTGTTGCACCGTTTTGGAGCACGAGCAGAAGACTAGATGCTGATCCCGCATTAATCCACCG TTCCTTGCCTGATGAGCTGCTCTTCGAGGTATTTGCACGAATGAATCCATATGATCTTGGGAGGGCAGCTTGTGCTTGCAGAAAGTGGAGATATGCTATT CGCAGCCCTGTTCTTTGGCGCAATGCCTGCTTGAAGGCTTGGCAATTATTTGGTGTAGTGGAAAACTACAAGCTTTTGCAGTCAAAATATGAAAGCTCAT GGAGAAAAATGTGGTTTTTAAGACCCAGGATCCGAACTGATGGTCTCTATGTGAGCAGAAACACATATATTCGTGTTGGAGTGCGAGAGTGGAGTGTCAC CAATCCAGTTCATCTGGTTTGCTATTTCCGTTACATGAGACTTTTTCCTTCCGGGAGGTTCCTTTACAAAAATTCTTCTCAAGTGGTGAAAGAAGTTGTG AAGATTATGAACCCTCGTGCACCTAAAGCTGATGGTGTTTTTAACGGTTGTTACACATTGAATGATGACCAGGTTGAAGCTGCTTTTCTATATTCTGGAT TGCGTCCTACTTTGTGGAAAATCCGCTTAAGGTTACGAGGGACAACACGAGGTGCAAACAATCGTATGGATTTGCTATCTCTGGTGACTAGCAAAGTGAA CAGTGAGGGCATCAATGGACCAGAGGAAGAGGTCCTTGGGGTGATTGATGGCTTGGATGATGAGATCTCACGTACATCACACAATAGAGGTCTGGCTCCT TTTGTGTTCGTCCCTTTTGAAGAGCTTCAATGGGAGATTGGGGAAGGTACTGACAAACTGGTGGTGTTAAATGCAGGTGGATACGCATGTACTGAATCTA CCAGTGGAAAAGATGGATTATTACGTTCCTGGGTAGAGATGAATCCGCTTCCTTCCTTTTTTCCATTTCGGATAGGTTTTGTTGGAAGCAGCAGCAAGGG TGCTGTATTAATAACTTCTTGTTCCGTTGGAATCGAATGCACGGAGGAATCTCTGTCGAAAGAACTCTGTATAGTGGAGCGAACTAGCGATTGCGAGGAT TATCAAGACGTTTACTGGGTTGTCATGTTCGATCTTCGTACTGCTCGGGCCACTCGAGCTTCTTCCTCGGACAAAATCGAACTCTTCGAATGA
AA sequence Show only first row Show all	>Lus10029676 pacid=23151993 polypeptide=Lus10029676 locus=Lus10029676.g ID=Lus10029676.BGIv1.0 annot-version=v1.0 MEEDALFFLDIAVQVPAELESALQLKTVRYFVTQRPWLDLYGVHVRPVAPFWSTSRRLDADPALIHRSLPDELLFEVFARMNPYDLGRAACACRKWRYAI RSPVLWRNACLKAWQLFGVVENYKLLQSKYESSWRKMWFLRPRIRTDGLYVSRNTYIRVGVREWSVTNPVHLVCYFRYMRLFPSGRFLYKNSSQVVKEVV KIMNPRAPKADGVFNGCYTLNDDQVEAAFLYSGLRPTLWKIRLRLRGTTRGANNRMDLLSLVTSKVNSEGINGPEEEVLGVIDGLDDEISRTSHNRGLAP FVFVPFEELQWEIGEGTDKLVVLNAGGYACTESTSGKDGLLRSWVEMNPLPSFFPFRIGFVGSSSKGAVLITSCSVGIECTEESLSKELCIVERTSDCED YQDVYWVVMFDLRTARATRASSSDKIELFE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21760		ATFBP7	F-box protein 7 (.1)		Lus10029676 [exp]	0	1
AT2G30070		ATKUP1, ATKT1P,...	POTASSIUM UPTAKE TRANSPORTER 1...		Lus10032327 [exp]	1.0	0.8832
AT3G61050		AtCLB, NTMCTYPE...	calcium-dependent lipid-bindin...		Lus10041396 [exp]	3.2	0.8476
AT5G61450			P-loop containing nucleoside t...		Lus10031163 [exp]	4.0	0.8427
AT3G10350			P-loop containing nucleoside t...		Lus10038715 [exp]	4.6	0.8439
AT5G64210		AOX2	alternative oxidase 2 (.1)		Lus10020523 [exp]	5.0	0.8394
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10032285 [exp]	6.9	0.8097
AT1G67280			Glyoxalase/Bleomycin resistanc...		Lus10011115 [exp]	6.9	0.8383
AT4G37440			unknown protein		Lus10014864 [exp]	8.8	0.8264
AT3G19290	bZIP	AREB2, ABF4	ABA-RESPONSIVE ELEMENT BINDING...		Lus10027897 [exp]	11.2	0.7641
AT5G24000			Protein of unknown function (D...		Lus10039272 [exp]	13.0	0.7827

Compare expression of checked genes

Lus10029676 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.