Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21780 538 / 0 BTB/POZ domain-containing protein (.1.2) AT1G55760 342 / 2e-114 BTB/POZ domain-containing protein (.1) AT1G54790 188 / 2e-54 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) AT3G05180 176 / 8e-50 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G56670 141 / 4e-37 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G09390 139 / 1e-36 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G62280 127 / 3e-32 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G26430 122 / 3e-30 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G01130 119 / 3e-29 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G67830 117 / 1e-28 ATFXG1 Arabidopsis thaliana alpha-fucosidase 1, alpha-fucosidase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042717 [exp] 667 / 0 AT1G21780 557 / 0.0 BTB/POZ domain-containing protein (.1.2) Lus10008348 [exp] 371 / 2e-125 AT1G55760 516 / 0.0 BTB/POZ domain-containing protein (.1) Lus10029638 [exp] 348 / 7e-116 AT1G54790 443 / 2e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10027101 [exp] 296 / 2e-96 AT1G55760 389 / 3e-136 BTB/POZ domain-containing protein (.1) Lus10029639 [exp] 247 / 6e-77 AT1G54790 421 / 4e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10029980 [exp] 187 / 8e-54 AT1G54790 578 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10003021 [exp] 137 / 1e-35 AT3G26430 385 / 4e-133 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10036873 [exp] 130 / 1e-33 AT3G26430 275 / 1e-90 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10001522 [exp] 129 / 6e-33 AT1G09390 459 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G178400 [exp] 566 / 0 AT1G21780 543 / 0.0 BTB/POZ domain-containing protein (.1.2) Potri.002G082800 [exp] 561 / 0 AT1G21780 535 / 0.0 BTB/POZ domain-containing protein (.1.2) Potri.001G468700 [exp] 360 / 2e-121 AT1G55760 522 / 0.0 BTB/POZ domain-containing protein (.1) Potri.002G216000 [exp] 199 / 2e-58 AT1G54790 474 / 1e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Potri.013G026300 [exp] 188 / 2e-54 AT1G54790 605 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Potri.005G038800 [exp] 182 / 3e-52 AT1G54790 595 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Potri.005G006500 [exp] 139 / 3e-36 AT1G09390 506 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G191100 [exp] 137 / 1e-35 AT1G09390 400 / 5e-139 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G177700 [exp] 134 / 1e-34 AT3G26430 407 / 2e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G083800 [exp] 134 / 2e-34 AT3G26430 405 / 8e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Lus10029677 pacid=23151978 polypeptide=Lus10029677 locus=Lus10029677.g ID=Lus10029677.BGIv1.0 annot-version=v1.0 ATGGTGGATTCCAAGGTGGAGACCATCTCCAGACTAGCCCAGTGGAAGATCGAGAACTTCGGTCCTTGTTCTTACAAAAAGTCCGATCCTTTTAAAGTCG GCATCTGGAATTGGCACTTGTCTGTGGAGAAGAATCGGTACCTGTATGTTCGTTTGTTTCCTGAGCCGTCTAGGGGATCCAAAGAGCAGCCTCCGATCGC CAGATTCATTCTCAGGGTGTCCTCCAATACCGGCCACAATCGGAGGCCTTACATTTCTCCAATTCACGAGCGACTGCTTCGGACATGTGATGATTTCGTG TGGCCAGTTGATAGCTCCTTCCATGGTCGATTCATCATTGACGTCGAGTTCCTGGATCTCAAAATCTGCCCTTTGAATGGGGCAGAAGCATGTTCCATAT GGCCTGGCGGTGATGGCGCAATGCAATCTGTATCGACTCAAAGCACTCTTAGATGTCTGTCACGGATGCTGGACGAGGGGATACACGCCGATGTGACCAT CAACACCGCTGAAGGCATTCTGAAAGCTCACAAGGCCATCCTTTCCGCAAGTTCACCAGTATTCCGGAGCATGTTCCATCACGACCTCAAGGAGAAAGAG TCTTCCACCATCTACATAGACGACATGTCGACCGAATCGTGTGTTGCTCTTCTGAGTTACTTGTACGGAACTATCAAGCAAGAGGATTTCTGGAGGCACC GTCTCTCCTTGCTGGGGGCTGCAAACAAGTACGATATTGAATCGCTCAAAGACGCTTGCGAGGAAAGCCTCTTGGAAGATATCAACTCGGCAAACGTGTT GGAGAGGCTGCAAGAGGCCTGGCTTTACCAGCTGGAGAAGCTGAAGAAAGGATGCTTGACCTACTTGTTTGATTTTGGAAAAATATACGATGTTAGAGAA GAAATCAACAACTTCTTCAGGCAGGCTGATAGGGAACTGATGCTGCAAATGTTCCAGCAGAAACATAGCCGTGGAACATCTTCAGGTGTCAAGCTGTCCG AACTAAGTCAGACAAAGGTGGGGAGGTGTCGGCACAACTGCGAGGCGGTTTTGATCGTTGTCGCTGCTGGGGGCTGCAAACAAGTACTATGGCTCGGCCC ACTGGCCTGCCTAGCCAGAGTCATAGCTGCAGCAAACACCTCCGCCGGCAACAAATCTGACGACGTCGATCAATGCGGCTGCCTGGCTTCAAGAAACAGA GCCTCCAAATCATTCAACTCCCAACTCAATCAGCTCTGCGCCAAGCTACGCGGAAAATACCCAGACGCCAAGCTCACATACGTAGACGTCTACTCCCTCA AACTCGATCTGATCGCGAACTACTCCCGTTACGGATTCAAGGAGCCGTTGGCGGCTTGCTGCGGCTACGGCGGGCCTCCCCTGAATTTCGGCAGCAGGGT GGACTGTGGAGTGACCAAGAACATCAACGGGACAATTGTGAAGGCGAATCCTTGTAACGACACTTCACAGTATGTGAATTGGGATGGAATTCATTACACC GAAGCTGCCAACCGGTTTGTTGCCCAGCAATTGCTGTCGGGAAATTTTACCGACGACGACCCACCGGCGGCAGCTGTATCGCATAAACCCAGTTTGTTAC GCTCGTCCAAACTGATGCTCTTCTGA
AA sequence Show only first row Show all	>Lus10029677 pacid=23151978 polypeptide=Lus10029677 locus=Lus10029677.g ID=Lus10029677.BGIv1.0 annot-version=v1.0 MVDSKVETISRLAQWKIENFGPCSYKKSDPFKVGIWNWHLSVEKNRYLYVRLFPEPSRGSKEQPPIARFILRVSSNTGHNRRPYISPIHERLLRTCDDFV WPVDSSFHGRFIIDVEFLDLKICPLNGAEACSIWPGGDGAMQSVSTQSTLRCLSRMLDEGIHADVTINTAEGILKAHKAILSASSPVFRSMFHHDLKEKE SSTIYIDDMSTESCVALLSYLYGTIKQEDFWRHRLSLLGAANKYDIESLKDACEESLLEDINSANVLERLQEAWLYQLEKLKKGCLTYLFDFGKIYDVRE EINNFFRQADRELMLQMFQQKHSRGTSSGVKLSELSQTKVGRCRHNCEAVLIVVAAGGCKQVLWLGPLACLARVIAAANTSAGNKSDDVDQCGCLASRNR ASKSFNSQLNQLCAKLRGKYPDAKLTYVDVYSLKLDLIANYSRYGFKEPLAACCGYGGPPLNFGSRVDCGVTKNINGTIVKANPCNDTSQYVNWDGIHYT EAANRFVAQQLLSGNFTDDDPPAAAVSHKPSLLRSSKLMLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21780			BTB/POZ domain-containing prot...		Lus10029677 [exp]	0	1
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10023851 [exp]	2.0	0.9265
AT2G19830		VPS32, SNF7.2	SNF7 family protein (.1)		Lus10032705 [exp]	2.2	0.9389
AT2G27490		ATCOAE	dephospho-CoA kinase family (....		Lus10002109 [exp]	2.2	0.9057
AT3G08890			Protein of unknown function, D...		Lus10012232 [exp]	3.0	0.9246
AT5G01830			ARM repeat superfamily protein...		Lus10025244 [exp]	5.7	0.8864
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10038334 [exp]	5.7	0.9192
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Lus10011064 [exp]	6.5	0.8950
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Lus10002410 [exp]	9.2	0.8577
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10020999 [exp]	9.5	0.8757
AT3G01120		AtCGS1, ATCYS1,...	METHIONINE OVERACCUMULATION 1,...		Lus10030694 [exp]	11.2	0.8345

Compare expression of checked genes

Lus10029677 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.