Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21810 267 / 2e-79 Plant protein of unknown function (DUF869) (.1) AT3G05270 242 / 2e-70 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G77580 237 / 2e-68 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G19835 132 / 1e-31 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT4G36120 132 / 2e-31 Plant protein of unknown function (DUF869) (.1) AT1G47900 125 / 2e-29 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT2G23360 85 / 1e-16 Plant protein of unknown function (DUF869) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042719 [exp] 1059 / 0 AT1G77580 386 / 5e-125 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10018164 [exp] 548 / 0 AT1G77580 395 / 6e-129 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10025674 [exp] 539 / 0 AT1G77580 343 / 9e-109 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10000186 [exp] 449 / 3e-149 AT1G77580 333 / 4e-106 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10012712 [exp] 169 / 4e-45 AT1G77580 233 / 1e-69 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10010888 [exp] 166 / 4e-44 AT1G77580 233 / 2e-69 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10034509 [exp] 141 / 1e-35 AT1G19835 582 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10033160 [exp] 140 / 4e-34 AT1G19835 949 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10012431 [exp] 139 / 2e-33 AT1G19835 901 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G178100 [exp] 328 / 2e-102 AT3G05270 356 / 1e-114 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.002G083400 [exp] 323 / 1e-99 AT3G05270 334 / 2e-105 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.007G098500 [exp] 256 / 4e-75 AT3G05270 310 / 7e-97 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G070400 [exp] 256 / 8e-75 AT3G05270 308 / 6e-96 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.002G024400 [exp] 144 / 4e-35 AT1G19835 941 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G237100 [exp] 139 / 7e-34 AT1G19835 869 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G140300 [exp] 97 / 2e-20 AT2G23360 551 / 0.0 Plant protein of unknown function (DUF869) (.1) Potri.009G099500 [exp] 89 / 4e-18 AT2G23360 295 / 2e-86 Plant protein of unknown function (DUF869) (.1) Potri.007G046100 [exp] 89 / 5e-18 AT2G23360 549 / 3e-180 Plant protein of unknown function (DUF869) (.1) Potri.001G304200 [exp] 82 / 6e-16 AT2G23360 279 / 2e-80 Plant protein of unknown function (DUF869) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05911 [flax] [poplar] FPP Filament-like plant protein, long coiled-coil
Representative CDS sequence Show only first row Show all	>Lus10029679 pacid=23151965 polypeptide=Lus10029679 locus=Lus10029679.g ID=Lus10029679.BGIv1.0 annot-version=v1.0 ATGGAAAAGAGGAATTGGCTGTGGAAGAAGAAACCCTCAGAGAAGGGCACCGGAGAAAGTGACAGTTCTGGAGGCGCTTCTGCATCCTCCCATTCAGAGA GATTCTCAGATGATCAGAGTTTCCATTTGACTTATACTGGAGCTAATGCTGACTTGACTGGCCTAACTGTGAAGCAGGAGGCACTGAAAGCATCTCCTCA CGACGACAGTCAATCACCAGAAGTCACGTCGAAAACTTCAGCTGTAGATGAAGAAGTTTATGACAGCACCACCATATCTTTAAAAGAGAAGCTGGCAGCT GCACTTGTGAACATGAGTGAAAAAGATGATTTGGTAAAGCAACACTCCAAGGTTGCTGAAGAAGCTGTTGCAGGCTGGGAAAAGGCTGAAAATGAAGTGG AGGTTCTTAAGAAACAGCTTGAAGCTGCAACGAAACAGAAATCTATACTCGAAGACCGCGTTAGCCATGTCGATGGAGCCCTCAAGGAGTGCGTTAGGCA ACTACGACAAGCTCAGGAGGAGCAGGAAATAAAGATACGCCAGGCGGTGGAAAATAACAGCATACAATGGGAATCCATAAAATCTGAACTAGAGCAACAG ATTTTCGAGCTCAAGAAAGAAGTTGCTGCAAAGCCTGAGGAGTCACTTGCTCGAGTTGATCCGGATCTCTATCGCAGGCTTGAATATCTGGAAGAAGAGA ACGAATCAATGAGGCTGGAGCTTTTGTCTCAATCTGAAGACCTAGAAGTTAGAACAATTGAAAGGGACTTGAGTACTCAAGCGGCTGAAACGGCCAGCAA GCAACATTTAGAGAGCATAAAGAAGTTGGCAAAGCTTGAAGCCGAGTGCCGAAGACTAAAGGCTGTAGCTTGTAGATCATCATCACCATCCTCACTTAAT ACTGATCATAAGAACTCGGCTGCTTCCTCGATTTATCTCGAGCCTCTCACGGATAGCAATTCATCAGCTGTTGAAATTGACCTCATGGATGATTTTCTTG AAATGGAAAGACTAGCTGCAATGCCCGAGACCAAAAGTGGAAGAAGTACTCGTCTCAAATCGGAAGTTGAACTCGAGATGGCTATTCGTCAGAGAGAAGA GTTGGAATGCAAGCTGAATGAGCTGCAAGAAGTGAATGATGGACTAGAACAAAGTTTGGAGAGTATGAAAGAGGAGAAATCTGAAATGGAATTTTGTCTA GAGAGAATGATGGCAGAGAAAGCACAAGTTGAAAGATGGTTAGAAGAAGTGGAAGCAGAAAAAGGTGAAGTGGAATTGTGTTTAGAGAGAATAATAGCAG AGAAAGCACATGTGGAAAGAAATTTAGAAGAAATGGTTGCTCAAAAGGCTAAAGTGGAATTATGTCTAGAGAAAATGATGGCAGAGAAAGCACAAGTCGA AAGAAACTTAGAAGAAATGGAAGCAGAAAAGGCTGAAGTGGAACTATGTCTGGAGAAAATCATAGCAGAGAAGGGACAAGTGGAAAGAAGTTTAGTAGAA ATGGAAGCAGAGAAAACCCAACTGGAAACTTCCCTAACCAGAGCTGAAGATGAGAAAATAGTATCTGAAACTCGGGTAAGGGAAGTCGAACTGAAGCTGG ATGAAGGTCAAACCCTCCTATTGTCAACGAAAGAATTGAAGCAGGAGATCGAGTTTCAGTTGATTGGCTTGGAAGCAGAATGTCGTACGTTGTCAGCAGA GGTTGTCAGCTTGGAATCCGAGCTTGAGAAGGAAAGGGCTTTGTCAGTCGAGTTGAGTATCAAGTTTCAGTACATGGAGGAAGAACTTGGTAGAATGCAG GACCAATTTGAGTACCAGCAATCCATTAGCTTGAACAGTGCTCCAAGGATAAAGCAGGAGGACTTGGCTTTGGCAGCTGGAAAACTTGCTGAATGCCAGA ACACAATACTGTCCCTTGGGAATCAACTCAAGTCTCTAGCAACGATTGAGGACTTCTTGATTGACAGCAACATACCTGAAATCTCAGTAGCAAATTGTTG TGCGTCTCCTGGAGGTAGTGGAGAACTGTGGAAGCTACATTGTAATGGGACATACTCTCCCAAGATAGGTTCAACTTCTTCTTCTTCTTCTAGAGTCGCT GTAGGGAGTCCTGGTCCTTCACCGAGTAAGCATGATCATCGCAGCTCGCCACCAGTTTCATCGACTTCGTCTTCTGTGGTGCATAGTGCAAGTTCTGATA AGAACAGAACTGGGTTTGCCAGTTTTTTCTCAAGGAGCAAGAACGGTATTCAGTTGGAACTTTAG
AA sequence Show only first row Show all	>Lus10029679 pacid=23151965 polypeptide=Lus10029679 locus=Lus10029679.g ID=Lus10029679.BGIv1.0 annot-version=v1.0 MEKRNWLWKKKPSEKGTGESDSSGGASASSHSERFSDDQSFHLTYTGANADLTGLTVKQEALKASPHDDSQSPEVTSKTSAVDEEVYDSTTISLKEKLAA ALVNMSEKDDLVKQHSKVAEEAVAGWEKAENEVEVLKKQLEAATKQKSILEDRVSHVDGALKECVRQLRQAQEEQEIKIRQAVENNSIQWESIKSELEQQ IFELKKEVAAKPEESLARVDPDLYRRLEYLEEENESMRLELLSQSEDLEVRTIERDLSTQAAETASKQHLESIKKLAKLEAECRRLKAVACRSSSPSSLN TDHKNSAASSIYLEPLTDSNSSAVEIDLMDDFLEMERLAAMPETKSGRSTRLKSEVELEMAIRQREELECKLNELQEVNDGLEQSLESMKEEKSEMEFCL ERMMAEKAQVERWLEEVEAEKGEVELCLERIIAEKAHVERNLEEMVAQKAKVELCLEKMMAEKAQVERNLEEMEAEKAEVELCLEKIIAEKGQVERSLVE MEAEKTQLETSLTRAEDEKIVSETRVREVELKLDEGQTLLLSTKELKQEIEFQLIGLEAECRTLSAEVVSLESELEKERALSVELSIKFQYMEEELGRMQ DQFEYQQSISLNSAPRIKQEDLALAAGKLAECQNTILSLGNQLKSLATIEDFLIDSNIPEISVANCCASPGGSGELWKLHCNGTYSPKIGSTSSSSSRVA VGSPGPSPSKHDHRSSPPVSSTSSSVVHSASSDKNRTGFASFFSRSKNGIQLEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77580			Plant protein of unknown funct...		Lus10029679 [exp]	0	1
AT1G01370		CENH3, HTR12	CENTROMERIC HISTONE H3, Histon...		Lus10008119 [exp]	2.6	0.9177
AT2G42120		POLD2	DNA polymerase delta small sub...		Lus10016262 [exp]	3.7	0.9241
AT4G14310			Transducin/WD40 repeat-like su...		Lus10011802 [exp]	3.9	0.9431
AT1G04030			unknown protein		Lus10029611 [exp]	3.9	0.9237
AT1G67180			zinc finger (C3HC4-type RING f...		Lus10034088 [exp]	4.9	0.9184
AT3G58930			F-box/RNI-like superfamily pro...		Lus10002820 [exp]	6.3	0.8856
AT1G77580			Plant protein of unknown funct...		Lus10042719 [exp]	8.8	0.8936
AT2G20635			ATP binding;protein kinases;pr...		Lus10033673 [exp]	10.1	0.9007
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10009653 [exp]	10.2	0.8883
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10001909 [exp]	10.7	0.9217

Compare expression of checked genes

Lus10029679 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.